Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01302 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCACGAATTAAAAAGATAATGCAAGCAGATGAGGACGTTGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTGTGTGACCGTACATATGAGATAACTCTACAAAGAGGAGCGAAGACAATGAACTCGTTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGCTGATGAAAGCAATGACATTGATGAGTTGAAGAAGAGCAAGACGCATGACATGAGCCATGGTAGCAGTGGTAGAGGAAGAGGAAGGGGACGAGGACGGGGTCGTGGACGACCTGCTCGATCAGTTGAAAAGGACAACTTCCAACCTAACCCCGACGTCGACCCTTGCACATCTATAGAGAACACGAACACGAACACGAACAAGAACCCCAACCAAGATGTGCACATGGAGCCTCACATTGAGCCTAGTGAAACACCAAAAGAAGAAGGTGAAGCCAATCAAACTATCCAAAACATCGATCTTAATGCCGATGTCAATGCTAGCAAAGACTCGAAGACTGTACCAGCAGCTATGTCAGATGTACCTGTAGAACCAGCCGAGCCTACTACTACCGAGTCCGAGGCTAAAGCAGCTGACGAATTCCCTGCCTGGCCTCTCTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCACAAGAGTAGACGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 858 46.5 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLADESNDIDELKKSKTHDMSHGSSGRGRGRGRGRGRGRPARSVEKDNFQPNPDVDPCTSIENTNTNTNKNPNQDVHMEPHIEPSETPKEEGEANQTIQNIDLNADVNASKDSKTVPAAMSDVPVEPAEPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEE 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6625659 6629725 + CmaCh04G013020.1 Cma04g01302 292383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01302 285 PANTHER HISTONE SUPERFAMILY PROTEIN 1 284 - -
Cma04g01302 285 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982
Cma04g01302 285 MobiDBLite consensus disorder prediction 182 196 - -
Cma04g01302 285 MobiDBLite consensus disorder prediction 90 132 - -
Cma04g01302 285 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 284 - -
Cma04g01302 285 MobiDBLite consensus disorder prediction 90 250 - -
Cma04g01302 285 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cma04g01302 285 MobiDBLite consensus disorder prediction 159 181 - -
Cma04g01302 285 MobiDBLite consensus disorder prediction 197 221 - -
Cma04g01302 285 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Cma04g01302 285 Coils Coil 267 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01302 K21752 DRAP1, NC2-alpha; Dr1-associated corepressor - csv:101209714 448.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01302 Cma-Chr4:6625659 Cma19g00286 Cma-Chr19:2160452 3.80E-13 dispersed
Cma20g00136 Cma-Chr20:655561 Cma04g01302 Cma-Chr4:6625659 1.81E-69 transposed
Cma18g00830 Cma-Chr18:7248093 Cma04g01302 Cma-Chr4:6625659 3.04E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00058 . 96 280 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 6.0e-88 321.2
Cma11g00030 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 3.9e-87 318.5
Cma11g01124 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 8.2e-53 204.5
Cma10g01076 . 76 243 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.7 1.4e-52 203.8
Cma11g01619 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 7.0e-52 201.4
Cma19g00286 . 73 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.8 9.1e-52 201.1
Cma11g01124 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 1.6e-53 206.8
Cma10g01076 . 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 53.1 1.9e-49 193.4
Cma11g01619 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 72.1 3.2e-49 192.6
Cma19g00286 . 33 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.1 1.6e-48 190.3
Cma10g00058 . 96 194 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cma11g00030 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cma11g01124 . 61 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.4 2.2e-60 229.6
Cma10g01076 . 1 243 CCAAT-HAP5 Transcription Factor Family AT1G54830 55.1 1.1e-54 210.7
Cma11g01619 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 2.5e-51 199.5
Cma10g00058 . 96 254 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 7.1e-51 198.0
Cma11g00030 . 39 197 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 1.2e-50 197.2
Cma19g00286 . 33 214 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.2 3.5e-50 195.7
Cma10g00058 . 96 253 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 2.5e-37 152.9
Cma11g00030 . 39 196 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.4 3.2e-37 152.5
Cma10g00058 . 96 280 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 2.9e-80 295.8
Cma11g00030 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 1.1e-79 293.9
Cma11g01124 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 9.1e-50 194.5
Cma11g01619 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.0e-49 193.4
Cma19g00286 . 73 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 1.3e-48 190.7
Cma10g01076 . 76 243 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.9 1.7e-48 190.3
Cma11g01619 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 4.7e-65 245.0
Cma19g00286 . 36 203 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.7 2.0e-60 229.6
Cma11g01124 . 82 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.7 1.1e-50 197.2
Cma10g00058 . 96 219 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.5e-50 194.9
Cma11g00030 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.5e-50 194.9
Cma10g01076 . 76 207 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.1 7.2e-50 194.5
Cma04g01302 . 1 284 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.7 7.6e-56 214.9
Cma05g00425 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.0 4.2e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34852 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01302 Cma_Chr04 FPKM 26.021236 27.668678 22.244467 21.433996 25.762861 29.212904 26.474018 22.201687 27.163774 24.569782