Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01302 ATGAGGAAGAAGCTCGATACCCGCTTTCCTGCTGCACGAATTAAAAAGATAATGCAAGCAGATGAGGACGTTGGAAAGATAGCACTTGCAGTGCCCGTTTTAGTTTCTAAAGCATTGGAACTGTTCCTGCAAGACCTGTGTGACCGTACATATGAGATAACTCTACAAAGAGGAGCGAAGACAATGAACTCGTTGCACCTAAAGCACTGTGTACAAAGCTATAGTGTTTTCGATTTTCTGAGGGATATTGTTAGTCGGGTTCCAGATTATGGTCATGGTCATTCTGATGGTGCTGTTGATGATAGAAAGAGGAGGAAACCCCTTGCTGATGAAAGCAATGACATTGATGAGTTGAAGAAGAGCAAGACGCATGACATGAGCCATGGTAGCAGTGGTAGAGGAAGAGGAAGGGGACGAGGACGGGGTCGTGGACGACCTGCTCGATCAGTTGAAAAGGACAACTTCCAACCTAACCCCGACGTCGACCCTTGCACATCTATAGAGAACACGAACACGAACACGAACAAGAACCCCAACCAAGATGTGCACATGGAGCCTCACATTGAGCCTAGTGAAACACCAAAAGAAGAAGGTGAAGCCAATCAAACTATCCAAAACATCGATCTTAATGCCGATGTCAATGCTAGCAAAGACTCGAAGACTGTACCAGCAGCTATGTCAGATGTACCTGTAGAACCAGCCGAGCCTACTACTACCGAGTCCGAGGCTAAAGCAGCTGACGAATTCCCTGCCTGGCCTCTCTCTGATGTGGACAAAATGGCAATTGACCCTCTCCAATATGCACATCTCAGCACAAGAGTAGACGAGGAAGAGGAAGATTATGATGAAGAGGAGTAA 858 46.5 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSRVPDYGHGHSDGAVDDRKRRKPLADESNDIDELKKSKTHDMSHGSSGRGRGRGRGRGRGRPARSVEKDNFQPNPDVDPCTSIENTNTNTNKNPNQDVHMEPHIEPSETPKEEGEANQTIQNIDLNADVNASKDSKTVPAAMSDVPVEPAEPTTTESEAKAADEFPAWPLSDVDKMAIDPLQYAHLSTRVDEEEEDYDEEE 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6625659 6629725 + CmaCh04G013020.1 Cma04g01302 292383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01302 285 PANTHER HISTONE SUPERFAMILY PROTEIN 1 284 - -
Cma04g01302 285 SUPERFAMILY Histone-fold 4 89 IPR009072 GO:0046982
Cma04g01302 285 MobiDBLite consensus disorder prediction 182 196 - -
Cma04g01302 285 MobiDBLite consensus disorder prediction 90 132 - -
Cma04g01302 285 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 284 - -
Cma04g01302 285 MobiDBLite consensus disorder prediction 90 250 - -
Cma04g01302 285 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cma04g01302 285 MobiDBLite consensus disorder prediction 159 181 - -
Cma04g01302 285 MobiDBLite consensus disorder prediction 197 221 - -
Cma04g01302 285 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Cma04g01302 285 Coils Coil 267 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01302 Cma-Chr4:6625659 Cma19g00286 Cma-Chr19:2160452 3.80E-13 dispersed
Cma20g00136 Cma-Chr20:655561 Cma04g01302 Cma-Chr4:6625659 1.81E-69 transposed
Cma18g00830 Cma-Chr18:7248093 Cma04g01302 Cma-Chr4:6625659 3.04E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34852 PF00808 CBFD_NFYB_HMF 2.10E-19 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01302 K21752 - csv:101209714 448.743