Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01306 ATGGGAAAGCTAAGCTTTAGCTTCCTTGAGAATTCAAAGCCTTACTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCTAAGGTCTCTCTTAGTAGAGGGATGAGTCATTACGTCCTCGTCGTTTATCGACACGCCTTCGCTACCGCTTCTATTGTTCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAACCGAAGATAACACTCAAAATTTTCATTCAAATATTTGTGTTAGCTTTGCTCGGTCCGGTAATCGATCAAAATTTCTACTACGCCGGGTTGAAATATACTTCGCCGACGTTCTCTTGTGCCATGAGCAACATGCTACCTGCAATGACATTCGTGATGGCTGTGATCTTCAGGATGGAAAATTTGGACATGAAGAAACTGAGATGCCAAGCAAAAGTTTTGGGAACCTTAGTGACAGTGGGTGGAGCAATGGTGATGACTTTGTACAAAGGTCCACTTGTTCAAATGCCTTGGTCTAAACATTCTCATCACTCTAATCAAGCCTCTGATGATAAAGCCAACAAAGATTGGTTCAAAGGCTCCATGTTCCTCATCATTGCCACTCTTGCTTGGGCTTCTCTCTTTGTCTTGCAGAATCAGGCATTGAAGACATACAAGAACCACCAATTCACTCTCACTACACTTGTGTGCTTTGTGGGGACTTTGCAAGCCATAGCTGTGACTTTAGTAGCTGAGCACAAAGCTGCCGTTTGGAGAATTGGTTGGGATATGAATCTCCTCGCCGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGCTAGTGATGAAAAAGAGGGGACCTGTATTTGCAACTGCATTTAGCCCTTTGATGATGATAATCGTGGCCATCATGGGCTCTTTCATCCTCGCTGAAAATATATTTCTCGGAGGAATAATAGGATCCATCTTCATAGTGTTTGGGCTATATTCAGTTCTTTGGGGAAAGCACAGAGAGAATTTGGAGATCAAAGTCGCTGCAGCCGCTGCTTCTTCTGATGAAGAAATACCACAACCAATCAAGCTTCCTTCTCAACCAAATAATAATAATAATAATAATAATATTGCAAATAATTCAATTTTCATTTCCATGCCTGCCCCTGAAAACCCCATCAAACCCAACCAAATCCCAAGAGAATAA 1179 42.07 MGKLSFSFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIVPFVLFFERRGQPKITLKIFIQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMENLDMKKLRCQAKVLGTLVTVGGAMVMTLYKGPLVQMPWSKHSHHSNQASDDKANKDWFKGSMFLIIATLAWASLFVLQNQALKTYKNHQFTLTTLVCFVGTLQAIAVTLVAEHKAAVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFATAFSPLMMIIVAIMGSFILAENIFLGGIIGSIFIVFGLYSVLWGKHRENLEIKVAAAAASSDEEIPQPIKLPSQPNNNNNNNNIANNSIFISMPAPENPIKPNQIPRE 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6645135 6648238 - CmaCh04G013060.1 Cma04g01306 292387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01306 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 331 - -
Cma04g01306 392 Pfam EamA-like transporter family 14 154 IPR000620 GO:0016020|GO:0016021
Cma04g01306 392 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020|GO:0016021
Cma04g01306 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
Cma04g01306 392 PANTHER WAT1-RELATED PROTEIN 9 367 - -
Cma04g01306 392 PANTHER WAT1-RELATED PROTEIN 9 367 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01306 Cma-Chr4:6645135 Cma06g00017 Cma-Chr6:119518 4.60E-161 dispersed
Cma17g00170 Cma-Chr17:879540 Cma04g01306 Cma-Chr4:6645135 1.47E-87 dispersed
Cma18g00826 Cma-Chr18:7215575 Cma04g01306 Cma-Chr4:6645135 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01306 - - csv:101206648 637.876