Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01316 ATGGAAAACGTGGAGGAAACGAAGCCATCAGGTACAAACATTTGCCTTCCTGATGGCGTAACAGACACCGCTGAAGTTCAATTTTCAGAATTTTGTGAGAACGGATTACGTCTGGATGAGAATTGCTGTAATCAAGCGTTGAAGTTATATAGAGAGACCAAGCACCTTTTGGTGGCAAACATATCAGCAATTGGGAGTGGAATTGTATATTTCTTTAGCATCTTCAAGCCCGAAGAAGCCAACCGATTTTGGTCCGCCTTTGTTTTGTATTCTGTGAAGAGGCTGAGAGATAAGAATTCAGAGAGTTCACATCAGGGATCTGAGAACAACAGCTTCACGTTATGCCACATATTGAGAGTTTGCAAGCTGAACATTGTAGAATTTTTTAAAGAGCTTCCTCAGTTTGTTGTAAAAGCTGGTCCAGTATTAAGTAATCTTTATGGTGCAGATTGGGAGAATAGACTAGAGGCAAAGGAGTTGCAGGCTAACTTCGTTCATTTGAGCCTCTTAAGCAAGTATTATAAGCGTGTCTACCGAGAATTCTTCTCCACCAGTGATGCTAATGTTGAAAAGCAGTCAGCTTTATCCTGTCCTACGGGTTACTTGTCTGATTACCATCGTTTTGGATGGTTGTTATTTTTGGCTCTTCGTGTACATTCTTTCAGTCGTTTTAAGGACTTGGTGACTTGCACTAATGGTTTGGTTTCCATTTTGTTGCTTACCGTGTTTATATTTTGTCCAGTTAAGAAAGGTGGAAAAGGAGTGGATCTGCTTGGATCACTTTGTAATGTCTATGACACCTCAGAGGTTGAACTGAGGGAAATAATGGATAAAGCAAATAGTTTGATAGAAGATATTTTGAAGAAGAAGCCGCGTTCGGCCTCTGAGTGTAATAGTAAAAGCTTGGAGAATATTGACACTGAGGGCTTGATATGCTTTGAAGGATTAATGGAGGAGTCATCTCTTTCATCCGGTTTAGAAATTCTTGAAAAGGACTATGAAGATGCAATTCATAATAAAGGTGAGCTCGATGAGCGGGTATTTGTTAATGATGAGGACAGTTTACTTGGTTCGGGTAGCTTGTCTGCAGGTGCTGTTGCAATGAGTGGCTTCAAGAGGAAGTTCGACTCAATGTGCTCACCTGCAAGGACAATAACCAGTCCAATGTCACCACTTCGCTCTCCTGGTTCGCACGCCAATGGCACTCTTAATAGTGGCAACGGGAAACTTGCTGCCACGCCTGTTAGTACAGCCATGACAACGGCAAAGTGGCTCAGAACAGTTATTTCTCCACTTCCAGCAAAACCTTCAGCAGAGATGGAGCGCTTTTTAGCTTCATGTGATAGGGATGTAACTAACGATGTAGTTCGCAGGGCACATATAATATTAGAGGCTATATTTCCAAATAGTGCTCTTGGAGAGCGTTGTATAGCTGGAAATTTACAAAGTGCAAACCTCATGGATAACATCTGGGCAGAGCAGCGGCGACTAGAAGCACTGAAGTTATATTATAGAGTTTTGGAAGCAATGTGCAGAGCAGAGTCTCAGATGCTGCATGTGACTAATTTGACCTCTTTGCTGACTAATGAGAGGTTCCATAGATGTATGCTGGCTTGTTCTGCCGAATTGGTTTTGGCGACTCATAAAACTGTTACGATGTTGTTTCCTGCTGTATTGGAGCGAACTGGAATCACCGCTTTTGACCTTAGTAAGGTGATAGAAAGTTTTATTAGACATGAAGAGTCGCTTCCTAGAGAGCTGAGGCGACATCTTAATTCTTTGGAAGAACGGCTATTAGAGAGCATGGTATGGGAAAAAGGTTCTTCGATGTATAACTCCCTGGTTGTGGCTAAACCTGCCCTTGCTGCAGAAATTAACCGTCTGGGTTTACTAGCTGAACCCATGCCATCTTTGGATGCAATTGCTGTTCAAATTAATTTTTCTGGTATTGGGGTATCAACCATGCCTAATTTGCAGAAGCATGAGAGTTTGCCAGGTCAAAATGGGCATATAAGGTCACCTAAAAGATTGTGCACAGATTTAAGAAGTGTGCTAGTGGAACGGAATTCTTTTACTTCTCCAGTGAAGGACCGACTCTTGGCTTTCAGTAATATCAAGTCTAAGCTTCTGCCACCTCCCTTACAGTCAGCATTTGCAAGTCCTACTCGGCCTAATCCCGGAGGTGGTGGTGAAACGTGCGCTGAAACTGGAATTAACATATTTTTTAGCAAGATCACCAAGTTGGCTGCTGTTAGAGTCAATGGTATGGTGGAAAGGTTGCAGTTATCTCATCAGATCAGGGAGAATGTCTACTGCCTTTTCCAACGGATACTCGGTCAAAAAACATCACTATTATTTAATCGTCACATCGACCAGATCATTCTTTGTTGTTTCTATGGTGTCGCGAAGATATCTCAATTGAGCCTCACGTTTAAGGAAATCATATACAACTACAGGAAGCAACCGCAATGTAAACCTCAAATCTTCCGAAATGTGTTTGTTGATTGGTCTTCAGCACGTCGTAATGGGAGATCAGGACAGGATCACGTGGATATAATTACGTTCTACAATGAAATATTTATCCCTTCTATAAAACCTTTGCTCGTTGAGATTGGCCCAGCTGCATCAACCACGAAAACTGACAGAGTTCCTCAAGTCAACCACAACAACAGCAATGCACCGTGCCCGGGATCACCTAAGATATCGCCTTTTCCAAGTCTTCCCGACATGTCTCCTAAGAAAGTATCTTCAGTACATAATGTCTATGTCTCTCCACTAAGATCATCAAAGATGGATGCGTTGATTTCACATAGTTCAAAAAGCTATTACGCTTGTGTCGGGGAGAGCACTCATGCGTTTCAAAGCCCTTCAAAAGACCTTACTGCCATAAACAACCGTTTGAATAGTACACCACGGAAACTCCGAGGCACACTAAATTTTGACGACGCGGACGTTGGTTTGGTCAGTGATTCCCTGGTGGCGAACAGCCTTTACCCACAAAATGGAAGTTGTGGATCATCCTCAGGTGCACCTATTAAATCTGAACAACCTGATTCTTAG 3060 42.45 MENVEETKPSGTNICLPDGVTDTAEVQFSEFCENGLRLDENCCNQALKLYRETKHLLVANISAIGSGIVYFFSIFKPEEANRFWSAFVLYSVKRLRDKNSESSHQGSENNSFTLCHILRVCKLNIVEFFKELPQFVVKAGPVLSNLYGADWENRLEAKELQANFVHLSLLSKYYKRVYREFFSTSDANVEKQSALSCPTGYLSDYHRFGWLLFLALRVHSFSRFKDLVTCTNGLVSILLLTVFIFCPVKKGGKGVDLLGSLCNVYDTSEVELREIMDKANSLIEDILKKKPRSASECNSKSLENIDTEGLICFEGLMEESSLSSGLEILEKDYEDAIHNKGELDERVFVNDEDSLLGSGSLSAGAVAMSGFKRKFDSMCSPARTITSPMSPLRSPGSHANGTLNSGNGKLAATPVSTAMTTAKWLRTVISPLPAKPSAEMERFLASCDRDVTNDVVRRAHIILEAIFPNSALGERCIAGNLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAESQMLHVTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLVVAKPALAAEINRLGLLAEPMPSLDAIAVQINFSGIGVSTMPNLQKHESLPGQNGHIRSPKRLCTDLRSVLVERNSFTSPVKDRLLAFSNIKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKITKLAAVRVNGMVERLQLSHQIRENVYCLFQRILGQKTSLLFNRHIDQIILCCFYGVAKISQLSLTFKEIIYNYRKQPQCKPQIFRNVFVDWSSARRNGRSGQDHVDIITFYNEIFIPSIKPLLVEIGPAASTTKTDRVPQVNHNNSNAPCPGSPKISPFPSLPDMSPKKVSSVHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAFQSPSKDLTAINNRLNSTPRKLRGTLNFDDADVGLVSDSLVANSLYPQNGSCGSSSGAPIKSEQPDS 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6696621 6703833 + CmaCh04G013160.1 Cma04g01316 292397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01316 1019 SUPERFAMILY Cyclin-like 421 616 IPR036915 -
Cma04g01316 1019 SMART RB_A_2 413 614 IPR002720 GO:0005634|GO:0051726
Cma04g01316 1019 PANTHER BNACNNG22930D PROTEIN 5 1005 - -
Cma04g01316 1019 SUPERFAMILY Cyclin-like 736 906 IPR036915 -
Cma04g01316 1019 SMART DUF3452_2 95 244 IPR024599 -
Cma04g01316 1019 MobiDBLite consensus disorder prediction 879 897 - -
Cma04g01316 1019 Gene3D - 416 604 - -
Cma04g01316 1019 Coils Coil 326 346 - -
Cma04g01316 1019 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 5 1005 IPR028309 GO:0006357|GO:0051726
Cma04g01316 1019 MobiDBLite consensus disorder prediction 879 898 - -
Cma04g01316 1019 Pfam Domain of unknown function (DUF3452) 105 240 IPR024599 -
Cma04g01316 1019 MobiDBLite consensus disorder prediction 386 408 - -
Cma04g01316 1019 Pfam Retinoblastoma-associated protein B domain 738 865 IPR002719 GO:0005634|GO:0051726
Cma04g01316 1019 Gene3D - 701 893 - -
Cma04g01316 1019 MobiDBLite consensus disorder prediction 1000 1019 - -
Cma04g01316 1019 Pfam Retinoblastoma-associated protein A domain 413 614 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00846 Cma-Chr18:7384877 Cma04g01316 Cma-Chr4:6696621 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34853 PF01858 RB_A 4.00E-64 CL0065 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01316 K04681 - csv:101219810 1796.56