Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01317 | ATGAATCGATTTCCCAATGATCTTGACGAAGAAATATGCATCACGGAGAAATTTGAGAGAGAGGAAGATGACGACGACGACGACGACGAGCAAGAAGATGGAGAAGACGACTGGGATGATTGGAATGCAGACGAGGAAGGAAGCGAAGAAGCATTTGATTCGAATTTTCTGTGTCTGTTCTGCAACTCGAAGTATAATGACTGCGACACGCTGTTCAACCACTGCAACTCGGTCCACTACTTCGATTTTCACGGCATCAGGAGGACTCTGGGTTTAGACTTTTATGGTTCGTTCAAAGTTATCAACTACATACGATCTCAGGTAGCAGAAAACAGATGTTGGAGCTGTGGTTTCTTGTGTCAATCAAACCAGGATTTACAGAACCATTTACACAAAACACTAAATCTCAGTGACGTAAAGGCTTTTTGGGATGATGATAAATATCTAAATCCCTTCAGGCAAGACGATCCGCTCCTGTACAGTTTTGCAGAAGACGAAGAGGATGATGAAATTTCACTCATCAACAATGATCTTCAGAGGAATGCGGGTACTGATGGAGGTAATTGCAATCATGATGAAATGAGTAGAGAAAATCTTCCATTTCATCCAAACCAAAACAAGGAAAATGGAATGGAAGATTGTTGTTCATCTTTACATGGTTATTTGAATGCTCCAAGCAACTTAGAGGCTGAGATTGAGAATACTGTGAAAACCACGGAAATCGTGGGACTGAAAGACAATCAATTAAAAATAGCCAGACGAAATGTTGATAGAATGGATATCAAGAATGCAAATGTAAATTACTTTGATTCATATAGCTCTTTTGGCATACACAGAGAGATGTTAAGCGACAAGGTCAGAACGGAAGCCTATATGCATGCTATTTTGCAAAATCCATCTCTCTTCCACAATGCAGCTGTGATGGATGTAGGCTGTGGAACAGGCATACTTAGTCTCTTTGCTGCAAAAGCGGGTGCATCGAGAGTTCTTGCGGTTGAAGCGAGTGAAAAGATGGCTGCAGTGGCCACCCAAATTGCTAAAGACAATGGCCTCTGGCGGAACGAGAAACAGACTGGAGACTATGGCGTGTCAAGTGGGACTATAGAAGTGGTTCATGGTATGGTAGAAGAACTTGATAAGAACATAAAGATTCAGCCTCACAGTGTTGACGTATTAGTGAGTGAATGGATGGGGTATTGCTTGCTGTATGAGTCAATGCTGAACTCAGTTCTCTTTGCAAGGGATCGTTGGTTGAAGCCTGGAGGTGCAATCTTACCAGATACTGCCACAATTCTTGTTGCAGGATTTGGAGCTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTATGGTTTCAGCATGTCTTGTGTTGGGAAGGAACTTGTAAAGGATGCTGCCAAAGCTCCCATTGTTGACATTGTGGATGCTAATGATTTGGTAACTAGTACTGCAATTCTCCATACTTTCGATCTTGCAACTATGCATCCTGATGAAGTAGACTTCACTGCAAGCACGGACTTGGAACCAAATTTACATTATCCTTCAAGCAACTCAGATGATGTTGAAGTAGAAGCATCTTGGTGTCATGGAGTTGTCCTATGGTTTGAAACTGGTTTCACAAGCAGATTTTGCAAGGAATCACCGGCTGTTCTGTCTACATCTCCCCACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCACAGAGCCAATTGCTATAACATCTAGAAAATCTGCCACCAACAAATCAGCACCAGTAGGTAGCCATGCCTCCCCTGCTGTCAAAGTTCATTTACGCCTTAGCATTGTCCGTGCGCCCGAACATCGGAGCATTGATATTTCACTAGAGACTACTGGGATTGCTGGTGATGGTCGGAACCGCGACTGGCCTGTACAACTTTTCACATTAAGATAG | 1920 | 42.81 | MNRFPNDLDEEICITEKFEREEDDDDDDDEQEDGEDDWDDWNADEEGSEEAFDSNFLCLFCNSKYNDCDTLFNHCNSVHYFDFHGIRRTLGLDFYGSFKVINYIRSQVAENRCWSCGFLCQSNQDLQNHLHKTLNLSDVKAFWDDDKYLNPFRQDDPLLYSFAEDEEDDEISLINNDLQRNAGTDGGNCNHDEMSRENLPFHPNQNKENGMEDCCSSLHGYLNAPSNLEAEIENTVKTTEIVGLKDNQLKIARRNVDRMDIKNANVNYFDSYSSFGIHREMLSDKVRTEAYMHAILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVLAVEASEKMAAVATQIAKDNGLWRNEKQTGDYGVSSGTIEVVHGMVEELDKNIKIQPHSVDVLVSEWMGYCLLYESMLNSVLFARDRWLKPGGAILPDTATILVAGFGAGGTSLPFWENVYGFSMSCVGKELVKDAAKAPIVDIVDANDLVTSTAILHTFDLATMHPDEVDFTASTDLEPNLHYPSSNSDDVEVEASWCHGVVLWFETGFTSRFCKESPAVLSTSPHTPKTHWSQTILTFTEPIAITSRKSATNKSAPVGSHASPAVKVHLRLSIVRAPEHRSIDISLETTGIAGDGRNRDWPVQLFTLR | 639 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6704408 | 6708978 | - | CmaCh04G013170.1 | Cma04g01317 | 292398 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01317 | 639 | Pfam | Methyltransferase domain | 307 | 422 | IPR041698 | - | |
Cma04g01317 | 639 | MobiDBLite | consensus disorder prediction | 16 | 44 | - | - | |
Cma04g01317 | 639 | Gene3D | - | 429 | 629 | - | - | |
Cma04g01317 | 639 | PANTHER | PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED | 26 | 637 | - | - | |
Cma04g01317 | 639 | SUPERFAMILY | beta-beta-alpha zinc fingers | 33 | 170 | IPR036236 | - | |
Cma04g01317 | 639 | MobiDBLite | consensus disorder prediction | 15 | 44 | - | - | |
Cma04g01317 | 639 | Pfam | C2H2 type zinc-finger (2 copies) | 58 | 132 | IPR041661 | - | |
Cma04g01317 | 639 | PANTHER | PROTEIN ARGININE N-METHYLTRANSFERASE | 26 | 637 | IPR025799 | GO:0016274|GO:0018216 | |
Cma04g01317 | 639 | CDD | AdoMet_MTases | 307 | 425 | - | - | |
Cma04g01317 | 639 | Gene3D | Vaccinia Virus protein VP39 | 256 | 426 | IPR029063 | - | |
Cma04g01317 | 639 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 271 | 577 | IPR029063 | - | |
Cma04g01317 | 639 | ProSiteProfiles | SAM-dependent methyltransferase PRMT-type domain profile. | 265 | 593 | IPR025799 | GO:0016274|GO:0018216 | |
Cma04g01317 | 639 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 58 | 79 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01317 | Cma-Chr4:6704408 | Cma11g00678 | Cma-Chr11:3284757 | 2.84E-68 | dispersed | |
Cma18g00847 | Cma-Chr18:7393281 | Cma04g01317 | Cma-Chr4:6704408 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01317 | K11436 | - | csv:101215999 | 1015.37 |