Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01317 ATGAATCGATTTCCCAATGATCTTGACGAAGAAATATGCATCACGGAGAAATTTGAGAGAGAGGAAGATGACGACGACGACGACGACGAGCAAGAAGATGGAGAAGACGACTGGGATGATTGGAATGCAGACGAGGAAGGAAGCGAAGAAGCATTTGATTCGAATTTTCTGTGTCTGTTCTGCAACTCGAAGTATAATGACTGCGACACGCTGTTCAACCACTGCAACTCGGTCCACTACTTCGATTTTCACGGCATCAGGAGGACTCTGGGTTTAGACTTTTATGGTTCGTTCAAAGTTATCAACTACATACGATCTCAGGTAGCAGAAAACAGATGTTGGAGCTGTGGTTTCTTGTGTCAATCAAACCAGGATTTACAGAACCATTTACACAAAACACTAAATCTCAGTGACGTAAAGGCTTTTTGGGATGATGATAAATATCTAAATCCCTTCAGGCAAGACGATCCGCTCCTGTACAGTTTTGCAGAAGACGAAGAGGATGATGAAATTTCACTCATCAACAATGATCTTCAGAGGAATGCGGGTACTGATGGAGGTAATTGCAATCATGATGAAATGAGTAGAGAAAATCTTCCATTTCATCCAAACCAAAACAAGGAAAATGGAATGGAAGATTGTTGTTCATCTTTACATGGTTATTTGAATGCTCCAAGCAACTTAGAGGCTGAGATTGAGAATACTGTGAAAACCACGGAAATCGTGGGACTGAAAGACAATCAATTAAAAATAGCCAGACGAAATGTTGATAGAATGGATATCAAGAATGCAAATGTAAATTACTTTGATTCATATAGCTCTTTTGGCATACACAGAGAGATGTTAAGCGACAAGGTCAGAACGGAAGCCTATATGCATGCTATTTTGCAAAATCCATCTCTCTTCCACAATGCAGCTGTGATGGATGTAGGCTGTGGAACAGGCATACTTAGTCTCTTTGCTGCAAAAGCGGGTGCATCGAGAGTTCTTGCGGTTGAAGCGAGTGAAAAGATGGCTGCAGTGGCCACCCAAATTGCTAAAGACAATGGCCTCTGGCGGAACGAGAAACAGACTGGAGACTATGGCGTGTCAAGTGGGACTATAGAAGTGGTTCATGGTATGGTAGAAGAACTTGATAAGAACATAAAGATTCAGCCTCACAGTGTTGACGTATTAGTGAGTGAATGGATGGGGTATTGCTTGCTGTATGAGTCAATGCTGAACTCAGTTCTCTTTGCAAGGGATCGTTGGTTGAAGCCTGGAGGTGCAATCTTACCAGATACTGCCACAATTCTTGTTGCAGGATTTGGAGCTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTATGGTTTCAGCATGTCTTGTGTTGGGAAGGAACTTGTAAAGGATGCTGCCAAAGCTCCCATTGTTGACATTGTGGATGCTAATGATTTGGTAACTAGTACTGCAATTCTCCATACTTTCGATCTTGCAACTATGCATCCTGATGAAGTAGACTTCACTGCAAGCACGGACTTGGAACCAAATTTACATTATCCTTCAAGCAACTCAGATGATGTTGAAGTAGAAGCATCTTGGTGTCATGGAGTTGTCCTATGGTTTGAAACTGGTTTCACAAGCAGATTTTGCAAGGAATCACCGGCTGTTCTGTCTACATCTCCCCACACTCCCAAAACTCACTGGTCTCAAACCATATTAACCTTCACAGAGCCAATTGCTATAACATCTAGAAAATCTGCCACCAACAAATCAGCACCAGTAGGTAGCCATGCCTCCCCTGCTGTCAAAGTTCATTTACGCCTTAGCATTGTCCGTGCGCCCGAACATCGGAGCATTGATATTTCACTAGAGACTACTGGGATTGCTGGTGATGGTCGGAACCGCGACTGGCCTGTACAACTTTTCACATTAAGATAG 1920 42.81 MNRFPNDLDEEICITEKFEREEDDDDDDDEQEDGEDDWDDWNADEEGSEEAFDSNFLCLFCNSKYNDCDTLFNHCNSVHYFDFHGIRRTLGLDFYGSFKVINYIRSQVAENRCWSCGFLCQSNQDLQNHLHKTLNLSDVKAFWDDDKYLNPFRQDDPLLYSFAEDEEDDEISLINNDLQRNAGTDGGNCNHDEMSRENLPFHPNQNKENGMEDCCSSLHGYLNAPSNLEAEIENTVKTTEIVGLKDNQLKIARRNVDRMDIKNANVNYFDSYSSFGIHREMLSDKVRTEAYMHAILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVLAVEASEKMAAVATQIAKDNGLWRNEKQTGDYGVSSGTIEVVHGMVEELDKNIKIQPHSVDVLVSEWMGYCLLYESMLNSVLFARDRWLKPGGAILPDTATILVAGFGAGGTSLPFWENVYGFSMSCVGKELVKDAAKAPIVDIVDANDLVTSTAILHTFDLATMHPDEVDFTASTDLEPNLHYPSSNSDDVEVEASWCHGVVLWFETGFTSRFCKESPAVLSTSPHTPKTHWSQTILTFTEPIAITSRKSATNKSAPVGSHASPAVKVHLRLSIVRAPEHRSIDISLETTGIAGDGRNRDWPVQLFTLR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6704408 6708978 - CmaCh04G013170.1 Cma04g01317 292398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01317 639 Pfam Methyltransferase domain 307 422 IPR041698 -
Cma04g01317 639 MobiDBLite consensus disorder prediction 16 44 - -
Cma04g01317 639 Gene3D - 429 629 - -
Cma04g01317 639 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 26 637 - -
Cma04g01317 639 SUPERFAMILY beta-beta-alpha zinc fingers 33 170 IPR036236 -
Cma04g01317 639 MobiDBLite consensus disorder prediction 15 44 - -
Cma04g01317 639 Pfam C2H2 type zinc-finger (2 copies) 58 132 IPR041661 -
Cma04g01317 639 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 26 637 IPR025799 GO:0016274|GO:0018216
Cma04g01317 639 CDD AdoMet_MTases 307 425 - -
Cma04g01317 639 Gene3D Vaccinia Virus protein VP39 256 426 IPR029063 -
Cma04g01317 639 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 271 577 IPR029063 -
Cma04g01317 639 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 265 593 IPR025799 GO:0016274|GO:0018216
Cma04g01317 639 ProSitePatterns Zinc finger C2H2 type domain signature. 58 79 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01317 Cma-Chr4:6704408 Cma11g00678 Cma-Chr11:3284757 2.84E-68 dispersed
Cma18g00847 Cma-Chr18:7393281 Cma04g01317 Cma-Chr4:6704408 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01317 K11436 - csv:101215999 1015.37