Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01321 ATGACTGATGTCAGTCCAAGGACTGATATCTCTACCGATGTCGACACAGATGACATAAACCAGAGGCTCGATATGGTTCAGTGGAACACGGTGGCTTCTGATTCCAGTGATAGAACAAAAGATAAGTCCGATCAGAAGACTCTACGTAGGCTCGCGCAGAATCGTGAAGCTGCCAGAAAAAGCCGACTGCGAAAAAAAGCATATGTCCAACAGCTAGAGAGCAGTCGTTTAAAGTTGACACAACTAGAGCAGGAGCTTCAGCGAGCACGGCAGCAGGGAGTGTTCATATCAAGCTCAGGAGATCAGGCCCATTCGATTACTGGAAATGGGGCCATGGCATTTGATGTGGAATATGCCCGTTGGTTGGAAGAACAAAACAAGCAGATCAATGAACTAAGAGCAGCGGTAAACTCTCATGCAAGTGATACTGAACTCCGAATGATCGTCGATGGCGTCTTGGCTCATTACGATGAGGTTTTTCGGCTAAAGGGCATCGCTGCAAAGGCTGATGTTTTCCATTTATTGTCTGGCATGTGGAAAACTCCTGCTGAAAGATGTTTTTTGTGGCTTGGTGGTTTCCGTTCATCGGAGCTCTTAAAGCTTCTTGTCAATCAATTAGAGCCCCTAACAGAACAGCAGTTCATGGGCATATCCAACTTGCAGCAGTCTTCACAACAGACTGAAGATGCATTGTCACAAGGCATGGAAGCATTGCAACAGTCGTTGGCGGAGACGTTGTCTAGCGGATCTCTTGGCTCCTCGAACACATCTGGCAATGTGGCAAACTATATGGGTCAAATGGCCACAGCCATGGGCAAATTTGGGACTCTTGAGGGGTTTATTCGCCAGGCTGACAATCTACGGCAACAAACACTACAGCAAATGCATCGGATATTGACAACTCGTCAGTCGGCTCGGGCACTTCTAGCAATTCATGATTACTTCTCCAGACTACGAGCCCTTAGTTCACTGTGGCTTGCTCGCCCAAAGGAGTGA 996 47.49 MTDVSPRTDISTDVDTDDINQRLDMVQWNTVASDSSDRTKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSITGNGAMAFDVEYARWLEEQNKQINELRAAVNSHASDTELRMIVDGVLAHYDEVFRLKGIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQFMGISNLQQSSQQTEDALSQGMEALQQSLAETLSSGSLGSSNTSGNVANYMGQMATAMGKFGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPKE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6717277 6722888 - CmaCh04G013210.1 Cma04g01321 292402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01321 331 SUPERFAMILY Leucine zipper domain 46 89 IPR046347 GO:0003700|GO:0006355
Cma04g01321 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 44 88 IPR004827 GO:0003700|GO:0006355
Cma04g01321 331 ProSiteProfiles DOG1 domain profile. 111 328 IPR025422 GO:0006351|GO:0043565
Cma04g01321 331 Gene3D - 45 94 - -
Cma04g01321 331 Coils Coil 122 142 - -
Cma04g01321 331 SMART brlzneu 42 105 IPR004827 GO:0003700|GO:0006355
Cma04g01321 331 PANTHER TRANSCRIPTION FACTOR TGA9 1 331 - -
Cma04g01321 331 Coils Coil 65 92 - -
Cma04g01321 331 Pfam Basic region leucine zipper 42 88 IPR004827 GO:0003700|GO:0006355
Cma04g01321 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 49 64 IPR004827 GO:0003700|GO:0006355
Cma04g01321 331 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 331 - -
Cma04g01321 331 Pfam Seed dormancy control 128 203 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01321 Cma-Chr4:6717277 Cma06g00025 Cma-Chr6:157073 0 dispersed
Cma12g00124 Cma-Chr12:511435 Cma04g01321 Cma-Chr4:6717277 0 transposed
Cma14g00509 Cma-Chr14:2477165 Cma04g01321 Cma-Chr4:6717277 0 transposed
Cma18g00849 Cma-Chr18:7429501 Cma04g01321 Cma-Chr4:6717277 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34854 PF14144 DOG1 7.40E-33 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01321 K14431 - csv:101216885 573.933