Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01330 ATGGCCCTTGTCTCTTCTAATGCTCAGTTCCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTGATTGAAAGGCTGCTCAAAACTTCCTCCTTCAACGTTACGGCTGTGGATTCTGGAAGCAAGGCTTTGGAGCTTCTAGGTTTGGTTAGAGAGAGAAATGGAAGCATCCATTCTCCTTTTTCCCCTGAAAATCATCATCATCAACATCATCAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGCAAGAAAATCCTATCTGGTTTTGCAGGAATCTGACTCAGTTAAAGACATACCTGTTGTGATTATGTCCTCTGAGAATGTTCCAGCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTTTGCTGAAACCAGTGAAATTATCTGATGTCAACAAGCTTAAGCCTTTCATATGCAGAGGAAAAGCCAAGGAAATGGATTGCAACAATAACAAGAGAAAGGAAATGGAACAGAGTCAATCATCTGAGAGAACAAGAGCAAAATACAATGAACCTCTCTAA 585 40.17 MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIHSPFSPENHHHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKARKSYLVLQESDSVKDIPVVIMSSENVPARINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDCNNNKRKEMEQSQSSERTRAKYNEPL 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6804061 6805397 + CmaCh04G013300.1 Cma04g01330 292411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01330 194 ProSiteProfiles Response regulatory domain profile. 11 160 IPR001789 GO:0000160
Cma04g01330 194 SUPERFAMILY CheY-like 10 152 IPR011006 -
Cma04g01330 194 MobiDBLite consensus disorder prediction 169 194 - -
Cma04g01330 194 SMART REC_2 10 156 IPR001789 GO:0000160
Cma04g01330 194 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 192 IPR045279 GO:0009736
Cma04g01330 194 CDD REC_typeA_ARR 12 155 - -
Cma04g01330 194 Pfam Response regulator receiver domain 12 152 IPR001789 GO:0000160
Cma04g01330 194 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 4 192 - -
Cma04g01330 194 Gene3D - 11 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01330 Cma-Chr4:6804061 Cma14g00515 Cma-Chr14:2564303 1.23E-68 dispersed
Cma04g01330 Cma-Chr4:6804061 Cma03g00130 Cma-Chr3:1360782 1.12E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34858 PF00072 Response_reg 1.20E-17 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01330 K14492 - csv:101207245 270.011