Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01337 | ATGTCAGTCAAGTTACAACAGATTGATCAAAAGGGTGGTGGTTCAGGCACACAGAAAAGGCTGAAGGATCTCACATCTCAGTCTGCCAATAAATTCTGTGCAGATTGTGGGTCTCCAGATCCAAAATGGGTATCTTTGAATTTGGGGGCATTTATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTCGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGCTAGATGATTGGACAGATGAACAAGTTGATGCTTTGACGAGTATAGGTGGAAATACTGCCGTTAACAAAAAGTATGAAGTTTTCATCCCAGATAGCGATAAGAAACCAAAACCAGACTCATCCATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTACTGCAATTCGCAAGTCTTGACGACCAGATTTTCTGTCCTTTTCCACCCCCGCAGAAGAAATCATCATTCTGGCATAGCATTTCTTATAATGGAAGCGAAGAAAGGAGGAATTACGAAAAACTACCGACAAAAACTCGAATCGGAAGTGCATTCCGCAACAGCTGGGGAAGAAAAGATTCTGAACCGAAGAACAGCAAGAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCAGGTATGATTGAATTCGTTGGTTTAATTAAGGTCAACGTAGTTAGAGGAACCAATTTAGCTATCAGGGATATGGTGACAAGCGACCCATATGTAATTCTCTCGTTGGGCAACCAATCAGTGAAGACACGAGTTATCAAGAGCAGTTTGAATCCAGTGTGGAATGAGAGCCTAATGCTGTCAATTCCTGATCACATTCCTCCATTAAGAGTGCTTGTGTATGACAAAGACACATTTTCAACCGACGACTTCATGGGTGAAGCAGAAATTGATATCAATCCACTGCTCACGGCAGCCCAAGCCTGTGAGAGATCCACAGTCAGTGAACCGATGCAGCTAGGAAAATGGGTAGCATGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCACTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAACGAGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG | 1113 | 43.31 | MSVKLQQIDQKGGGSGTQKRLKDLTSQSANKFCADCGSPDPKWVSLNLGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALTSIGGNTAVNKKYEVFIPDSDKKPKPDSSIEERLDFIRKKYELLQFASLDDQIFCPFPPPQKKSSFWHSISYNGSEERRNYEKLPTKTRIGSAFRNSWGRKDSEPKNSKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAIRDMVTSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDHIPPLRVLVYDKDTFSTDDFMGEAEIDINPLLTAAQACERSTVSEPMQLGKWVACKENTLAKDGIITLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6824795 | 6828545 | - | CmaCh04G013370.1 | Cma04g01337 | 292418 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01337 | 370 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cma04g01337 | 370 | Pfam | Putative GTPase activating protein for Arf | 19 | 133 | IPR001164 | GO:0005096 | |
Cma04g01337 | 370 | Gene3D | Arf GTPase activating protein | 3 | 139 | IPR038508 | - | |
Cma04g01337 | 370 | Pfam | C2 domain | 215 | 307 | IPR000008 | - | |
Cma04g01337 | 370 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 10 | 370 | IPR044518 | GO:0005096|GO:0005543 | |
Cma04g01337 | 370 | CDD | C2_ArfGAP | 213 | 357 | - | - | |
Cma04g01337 | 370 | PRINTS | HIV Rev interacting protein signature | 30 | 49 | IPR001164 | GO:0005096 | |
Cma04g01337 | 370 | PRINTS | HIV Rev interacting protein signature | 49 | 66 | IPR001164 | GO:0005096 | |
Cma04g01337 | 370 | PRINTS | HIV Rev interacting protein signature | 70 | 91 | IPR001164 | GO:0005096 | |
Cma04g01337 | 370 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 213 | 307 | IPR035892 | - | |
Cma04g01337 | 370 | CDD | ArfGap | 21 | 127 | - | - | |
Cma04g01337 | 370 | SMART | arf_gap_3 | 18 | 140 | IPR001164 | GO:0005096 | |
Cma04g01337 | 370 | SMART | C2_3c | 215 | 310 | IPR000008 | - | |
Cma04g01337 | 370 | Gene3D | C2 domain | 213 | 368 | IPR035892 | - | |
Cma04g01337 | 370 | ProSiteProfiles | C2 domain profile. | 196 | 312 | IPR000008 | - | |
Cma04g01337 | 370 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 18 | 132 | IPR001164 | GO:0005096 | |
Cma04g01337 | 370 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 18 | 133 | IPR037278 | - | |
Cma04g01337 | 370 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED | 10 | 370 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g01448 | Cma-Chr3:9065506 | Cma04g01337 | Cma-Chr4:6824795 | 7.49E-109 | dispersed | |
Cma04g01337 | Cma-Chr4:6824795 | Cma04g02214 | Cma-Chr4:15444552 | 4.54E-180 | dispersed | |
Cma18g00867 | Cma-Chr18:7545002 | Cma04g01337 | Cma-Chr4:6824795 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01337 | K12486 | - | csv:101221541 | 634.024 |