Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01337 ATGTCAGTCAAGTTACAACAGATTGATCAAAAGGGTGGTGGTTCAGGCACACAGAAAAGGCTGAAGGATCTCACATCTCAGTCTGCCAATAAATTCTGTGCAGATTGTGGGTCTCCAGATCCAAAATGGGTATCTTTGAATTTGGGGGCATTTATTTGCATCAAGTGTTCTGGAGTACACCGAAGCCTCGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGCTAGATGATTGGACAGATGAACAAGTTGATGCTTTGACGAGTATAGGTGGAAATACTGCCGTTAACAAAAAGTATGAAGTTTTCATCCCAGATAGCGATAAGAAACCAAAACCAGACTCATCCATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTACTGCAATTCGCAAGTCTTGACGACCAGATTTTCTGTCCTTTTCCACCCCCGCAGAAGAAATCATCATTCTGGCATAGCATTTCTTATAATGGAAGCGAAGAAAGGAGGAATTACGAAAAACTACCGACAAAAACTCGAATCGGAAGTGCATTCCGCAACAGCTGGGGAAGAAAAGATTCTGAACCGAAGAACAGCAAGAAGGGAAATGCATTGGTATTAAGCAGCTCAATGGCAGGTATGATTGAATTCGTTGGTTTAATTAAGGTCAACGTAGTTAGAGGAACCAATTTAGCTATCAGGGATATGGTGACAAGCGACCCATATGTAATTCTCTCGTTGGGCAACCAATCAGTGAAGACACGAGTTATCAAGAGCAGTTTGAATCCAGTGTGGAATGAGAGCCTAATGCTGTCAATTCCTGATCACATTCCTCCATTAAGAGTGCTTGTGTATGACAAAGACACATTTTCAACCGACGACTTCATGGGTGAAGCAGAAATTGATATCAATCCACTGCTCACGGCAGCCCAAGCCTGTGAGAGATCCACAGTCAGTGAACCGATGCAGCTAGGAAAATGGGTAGCATGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCACTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAACGAGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 1113 43.31 MSVKLQQIDQKGGGSGTQKRLKDLTSQSANKFCADCGSPDPKWVSLNLGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALTSIGGNTAVNKKYEVFIPDSDKKPKPDSSIEERLDFIRKKYELLQFASLDDQIFCPFPPPQKKSSFWHSISYNGSEERRNYEKLPTKTRIGSAFRNSWGRKDSEPKNSKKGNALVLSSSMAGMIEFVGLIKVNVVRGTNLAIRDMVTSDPYVILSLGNQSVKTRVIKSSLNPVWNESLMLSIPDHIPPLRVLVYDKDTFSTDDFMGEAEIDINPLLTAAQACERSTVSEPMQLGKWVACKENTLAKDGIITLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6824795 6828545 - CmaCh04G013370.1 Cma04g01337 292418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01337 370 MobiDBLite consensus disorder prediction 1 20 - -
Cma04g01337 370 Pfam Putative GTPase activating protein for Arf 19 133 IPR001164 GO:0005096
Cma04g01337 370 Gene3D Arf GTPase activating protein 3 139 IPR038508 -
Cma04g01337 370 Pfam C2 domain 215 307 IPR000008 -
Cma04g01337 370 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 370 IPR044518 GO:0005096|GO:0005543
Cma04g01337 370 CDD C2_ArfGAP 213 357 - -
Cma04g01337 370 PRINTS HIV Rev interacting protein signature 30 49 IPR001164 GO:0005096
Cma04g01337 370 PRINTS HIV Rev interacting protein signature 49 66 IPR001164 GO:0005096
Cma04g01337 370 PRINTS HIV Rev interacting protein signature 70 91 IPR001164 GO:0005096
Cma04g01337 370 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 213 307 IPR035892 -
Cma04g01337 370 CDD ArfGap 21 127 - -
Cma04g01337 370 SMART arf_gap_3 18 140 IPR001164 GO:0005096
Cma04g01337 370 SMART C2_3c 215 310 IPR000008 -
Cma04g01337 370 Gene3D C2 domain 213 368 IPR035892 -
Cma04g01337 370 ProSiteProfiles C2 domain profile. 196 312 IPR000008 -
Cma04g01337 370 ProSiteProfiles ARF GTPase-activating proteins domain profile. 18 132 IPR001164 GO:0005096
Cma04g01337 370 SUPERFAMILY ArfGap/RecO-like zinc finger 18 133 IPR037278 -
Cma04g01337 370 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 10 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01448 Cma-Chr3:9065506 Cma04g01337 Cma-Chr4:6824795 7.49E-109 dispersed
Cma04g01337 Cma-Chr4:6824795 Cma04g02214 Cma-Chr4:15444552 4.54E-180 dispersed
Cma18g00867 Cma-Chr18:7545002 Cma04g01337 Cma-Chr4:6824795 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01337 K12486 - csv:101221541 634.024