Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g01338 | ATGTCATCTGCAAATCCTTATTTTGACGACGTTCGGACCAAACCTGAGGTTATTGATCCTCCACAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAGCCTAACGTGGTTGTCTCGAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCTATACATCAGTGTTCGAATGGTCACACATTGTGTTCGGGATGCAAGCCGAGGGTGCACAACCGGTGTCCGACCTGCAGGCATGAACTTGGGAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTGGGCATATACCCCTACTATAGCAAGCTGAAACATGAATCTCAATGTGTATATCGACCCTATAACTGTCCTTATGCGGGGTCGGAATGCACGGTTGTTGGTGATATTCCGTTTTTGGTAGCTCACCTCAAGGACGATCACAAAGTCGACATGCACAATGGAAGCACTTTCAATCACCGGTACGTCAAGTCAAATCCGCAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTTCAACTCGGGATGGCACCGGTGTACATAGCTTTCTTGCGGTTTATGGGGGATGATAATGAAGCGAAGAACTACAGTTATAGTCTAGAGGTGGGTGGAAATGGGAGGAAGACGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTACGGGACAGTTTTGACGGGCTTATTATCCAACGTAACATGGCGCTGTTCTTCTCGGGGGGAGATGGGAAAGAATTGAAGCTGAGAGTAACTGGTAGGATTTGGAAGGAGCAGTAG | 918 | 46.51 | MSSANPYFDDVRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVVVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVVGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKTVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDGKELKLRVTGRIWKEQ | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 6829073 | 6832650 | - | CmaCh04G013380.1 | Cma04g01338 | 292419 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g01338 | 305 | SUPERFAMILY | RING/U-box | 49 | 97 | - | - | |
| Cma04g01338 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 165 | IPR013083 | - | |
| Cma04g01338 | 305 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 298 | IPR008974 | GO:0005515 | |
| Cma04g01338 | 305 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE DIS1 | 7 | 305 | - | - | |
| Cma04g01338 | 305 | SUPERFAMILY | TRAF domain-like | 110 | 302 | - | - | |
| Cma04g01338 | 305 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Cma04g01338 | 305 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 7 | 305 | - | - | |
| Cma04g01338 | 305 | CDD | Sina | 171 | 299 | - | - | |
| Cma04g01338 | 305 | CDD | RING-HC_SIAHs | 55 | 93 | - | - | |
| Cma04g01338 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 109 | IPR013083 | - | |
| Cma04g01338 | 305 | Pfam | Seven in absentia protein family | 99 | 298 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Cma04g01338 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - | |
| Cma04g01338 | 305 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01338 | Cma-Chr4:6829073 | Cma18g00866 | Cma-Chr18:7539215 | 0 | dispersed | |
| Cma04g01338 | Cma-Chr4:6829073 | Cma15g00822 | Cma-Chr15:4132604 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g01338 | K04506 | - | csv:101205198 | 620.542 |