Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01355 ATGGGGAAGAAAGGGAGTTGTTTTTTTGGAGTGAGGAAAGTTCTCAGTCACCATCATGAGAAGAAAGACAAGAAACCAAACAAATATAAGAATAAATGGATCCAAGAGGAGGAGAATGTGGATGTCATTTCCTTTTTGGAACAATCCCAATTGGAGGTTCTTGCACAGCCTCCTATGATAGAAACAAGCGAGCTTGCGCATTTGGAGGCTGCGGAGCCTTCTGTTGCTGAAGCTCAGCTGGCTGTGGAGGTTGAATATCCACCTAGTTTTATCCCTCGTCGGCCAGAGATGTCGGAGGAAACAGCTGCTATTATGATTCAAGCTGCGTTTCGTGGATATACGGCACGGAGAGCATTGAGAGCTCTCAAAGCGTCGATGAGATTGAAGGCGTTGGCACAAGGGCAGTCTGTCAAACGGCAAGTGGCCCATACTTTAAAATACATGCAGACCATTACTCATTTACAGGCAGAGATTCATAAGAGGAGAATAAGAATGTCGGAAGAAAATCAGGCTCTTCATCGGCAACTTTATAAGAAACGTGAGAAACATGTCGAGAAGTTAAAATCTTCTATGGACAATGACTGGAATCACAGCACCCAATCTAAGGCACAAATTGAAGCTAAATTATTGAACAAGCAAGTAGGTGCACTTAGAAGAGAAAGGGCTCTGGCTTATGCTTACTCTCATCAGCCAACATGGAAATTTTTTTCAAGAACTGCAACCCCCAGTTTCATGGATCCAAACAATCCCCACTGGGGTTGGAGTTGGTTGGAGAGGTGGATGGCAGCTCGTCCATGGGAACTCCGAATCACCGACGAGCAAATGGATCACATTTCTGTCATGAGCATTGCTACCCGTGCTTCTGTGGTTGATATAATCCAAATTTTTTCTCGTCGTGATCAGATCTTTTATACCAAGCCTTCTCTAAGGTCTCCTACAAGGCAACTGCTGCATAGGCATCATTCTCCTTCAACTTCTAAGCCACTATCTCCCTCATCTAGCAGAAACAAAAAGAATGCAGCCAATTCAGGGATAAGCAGCTGGGGCGCGTATGATGTCAATTCAAAGCTCTTCCGGAGGCATACTATTGGAGGGTCATCACTCAAGGATGATACAACCATTGCCAGTTCACCTTCAGTTTCAAGTCACACAACGCCATCAAAGGCTGTCAAGACTCCGTCCCGGTTTGCAAGTTCATCTAGAACAGAGAAGAAAGGAACAGTGGAAAAAGGATCTACAAGTACAAGTTCTGCAAGGAAGCAGCTTTCCTTTACAGCTCCTCCTGTTAAGCCAAGGAGGCGATCTAGTCCTCCATTGCCGAAAGCGAAACCCTGGGCTACGACTACTATTCTTCTTTCACGAGGAAAAGGTTCAGGCCTTCGCATCCGTGTCCAGGCTTATCGAGAAGTGTTTTATTTAAGTAGAAGCATTAACCAAAGCCTTGCCCCATATTCCACTCGTCTTCTTCTCATTTTTCCTTCCAATCTGTGCTACAATGGCGACCTAGAACTCTCTATTCTCTTTGTTTCTTTCTGCAGAAATGGATTGCTCTTGAGCCCTGTCGAAATGTGTGATACGCATCGATTTCAAATTCGTCTCTTTGGGTTTTGCTGGTTTCGGATTCGATTCCTCGCGGTGCTGCTTTTATTCAATCGGTTATCCACACCTCCTGTCTGTCGATTTCGTTGA 1689 44.88 MGKKGSCFFGVRKVLSHHHEKKDKKPNKYKNKWIQEEENVDVISFLEQSQLEVLAQPPMIETSELAHLEAAEPSVAEAQLAVEVEYPPSFIPRRPEMSEETAAIMIQAAFRGYTARRALRALKASMRLKALAQGQSVKRQVAHTLKYMQTITHLQAEIHKRRIRMSEENQALHRQLYKKREKHVEKLKSSMDNDWNHSTQSKAQIEAKLLNKQVGALRRERALAYAYSHQPTWKFFSRTATPSFMDPNNPHWGWSWLERWMAARPWELRITDEQMDHISVMSIATRASVVDIIQIFSRRDQIFYTKPSLRSPTRQLLHRHHSPSTSKPLSPSSSRNKKNAANSGISSWGAYDVNSKLFRRHTIGGSSLKDDTTIASSPSVSSHTTPSKAVKTPSRFASSSRTEKKGTVEKGSTSTSSARKQLSFTAPPVKPRRRSSPPLPKAKPWATTTILLSRGKGSGLRIRVQAYREVFYLSRSINQSLAPYSTRLLLIFPSNLCYNGDLELSILFVSFCRNGLLLSPVEMCDTHRFQIRLFGFCWFRIRFLAVLLLFNRLSTPPVCRFR 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6912495 6918886 - CmaCh04G013550.1 Cma04g01355 292436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01355 562 MobiDBLite consensus disorder prediction 364 443 - -
Cma04g01355 562 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Cma04g01355 562 PANTHER IQ-DOMAIN 5-RELATED 72 438 - -
Cma04g01355 562 MobiDBLite consensus disorder prediction 367 401 - -
Cma04g01355 562 Pfam IQ calmodulin-binding motif 102 120 IPR000048 GO:0005515
Cma04g01355 562 MobiDBLite consensus disorder prediction 409 423 - -
Cma04g01355 562 SMART iq_5 98 120 IPR000048 GO:0005515
Cma04g01355 562 MobiDBLite consensus disorder prediction 313 345 - -
Cma04g01355 562 MobiDBLite consensus disorder prediction 322 345 - -
Cma04g01355 562 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 72 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01355 - - - csv:101223184 516.153
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01355 Cma15g00434 CCT
Cma04g01355 Cma04g02600 CCT
Cma04g01355 Cma15g00434 ECH
Cma04g02600 Cma04g01355 ECH
Cma04g01355 Cma04g02600 ECH
Cma04g01355 Cma18g00883 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01355 Cma-Chr4:6912495 Cma07g00937 Cma-Chr7:4504725 5.52E-64 dispersed
Cma15g00434 Cma-Chr15:1943695 Cma04g01355 Cma-Chr4:6912495 3.21E-106 wgd
Cma18g00883 Cma-Chr18:7634836 Cma04g01355 Cma-Chr4:6912495 2.00E-136 wgd
Cma04g01355 Cma-Chr4:6912495 Cma04g02600 Cma-Chr4:17780558 5.28E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01355 CCT,CST,ECH 99 267 IQD Protein Family AT3G09710 55.2 4.6e-47 186.4
Cma06g00359 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.5e-61 232.6
Cma15g00434 CCT,CST,ECH 2 464 IQD Protein Family AT3G52290 54.5 6.7e-101 365.2
Cma04g02600 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.7 1.1e-100 364.4
Cma10g00857 CCT 1 394 IQD Protein Family AT3G22190 56.8 1.1e-92 337.8
Cma11g00912 CCT 43 448 IQD Protein Family AT3G22190 55.0 5.8e-89 325.5
Cma01g01729 . 1 434 IQD Protein Family AT2G26180 59.5 3.9e-114 409.1
Cma09g00343 . 1 438 IQD Protein Family AT2G26180 58.0 1.1e-111 401.0
Cma07g00203 . 1 279 IQD Protein Family AT2G33990 51.6 4.0e-64 242.3
Cma16g00415 . 40 223 IQD Protein Family AT2G33990 52.9 1.2e-47 187.6
Cma07g00203 . 1 253 IQD Protein Family AT3G15050 51.4 7.7e-60 228.0
Cma16g00415 . 43 216 IQD Protein Family AT3G15050 61.0 4.1e-53 205.7
Cma06g00946 . 1 500 IQD Protein Family AT4G00820 55.7 8.8e-127 451.4
Cma06g00946 . 1 500 IQD Protein Family AT1G01110 52.7 4.0e-124 442.6
Cma08g00741 CCT,CST,ECH 220 616 IQD Protein Family AT3G16490 51.6 5.9e-72 268.9
Cma17g00759 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 51.5 4.2e-70 262.7
Cma10g00673 CST 1 376 IQD Protein Family AT3G16490 53.1 5.2e-68 255.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012991 0 3 0 0 0 1 2 0 0 1 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 3 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01355 Cma_Chr04 FPKM 8.215088 9.389858 2.341441 1.722182 1.344147 1.401998 1.181287 0.854319 0.985679 1.001998