Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01355 ATGGGGAAGAAAGGGAGTTGTTTTTTTGGAGTGAGGAAAGTTCTCAGTCACCATCATGAGAAGAAAGACAAGAAACCAAACAAATATAAGAATAAATGGATCCAAGAGGAGGAGAATGTGGATGTCATTTCCTTTTTGGAACAATCCCAATTGGAGGTTCTTGCACAGCCTCCTATGATAGAAACAAGCGAGCTTGCGCATTTGGAGGCTGCGGAGCCTTCTGTTGCTGAAGCTCAGCTGGCTGTGGAGGTTGAATATCCACCTAGTTTTATCCCTCGTCGGCCAGAGATGTCGGAGGAAACAGCTGCTATTATGATTCAAGCTGCGTTTCGTGGATATACGGCACGGAGAGCATTGAGAGCTCTCAAAGCGTCGATGAGATTGAAGGCGTTGGCACAAGGGCAGTCTGTCAAACGGCAAGTGGCCCATACTTTAAAATACATGCAGACCATTACTCATTTACAGGCAGAGATTCATAAGAGGAGAATAAGAATGTCGGAAGAAAATCAGGCTCTTCATCGGCAACTTTATAAGAAACGTGAGAAACATGTCGAGAAGTTAAAATCTTCTATGGACAATGACTGGAATCACAGCACCCAATCTAAGGCACAAATTGAAGCTAAATTATTGAACAAGCAAGTAGGTGCACTTAGAAGAGAAAGGGCTCTGGCTTATGCTTACTCTCATCAGCCAACATGGAAATTTTTTTCAAGAACTGCAACCCCCAGTTTCATGGATCCAAACAATCCCCACTGGGGTTGGAGTTGGTTGGAGAGGTGGATGGCAGCTCGTCCATGGGAACTCCGAATCACCGACGAGCAAATGGATCACATTTCTGTCATGAGCATTGCTACCCGTGCTTCTGTGGTTGATATAATCCAAATTTTTTCTCGTCGTGATCAGATCTTTTATACCAAGCCTTCTCTAAGGTCTCCTACAAGGCAACTGCTGCATAGGCATCATTCTCCTTCAACTTCTAAGCCACTATCTCCCTCATCTAGCAGAAACAAAAAGAATGCAGCCAATTCAGGGATAAGCAGCTGGGGCGCGTATGATGTCAATTCAAAGCTCTTCCGGAGGCATACTATTGGAGGGTCATCACTCAAGGATGATACAACCATTGCCAGTTCACCTTCAGTTTCAAGTCACACAACGCCATCAAAGGCTGTCAAGACTCCGTCCCGGTTTGCAAGTTCATCTAGAACAGAGAAGAAAGGAACAGTGGAAAAAGGATCTACAAGTACAAGTTCTGCAAGGAAGCAGCTTTCCTTTACAGCTCCTCCTGTTAAGCCAAGGAGGCGATCTAGTCCTCCATTGCCGAAAGCGAAACCCTGGGCTACGACTACTATTCTTCTTTCACGAGGAAAAGGTTCAGGCCTTCGCATCCGTGTCCAGGCTTATCGAGAAGTGTTTTATTTAAGTAGAAGCATTAACCAAAGCCTTGCCCCATATTCCACTCGTCTTCTTCTCATTTTTCCTTCCAATCTGTGCTACAATGGCGACCTAGAACTCTCTATTCTCTTTGTTTCTTTCTGCAGAAATGGATTGCTCTTGAGCCCTGTCGAAATGTGTGATACGCATCGATTTCAAATTCGTCTCTTTGGGTTTTGCTGGTTTCGGATTCGATTCCTCGCGGTGCTGCTTTTATTCAATCGGTTATCCACACCTCCTGTCTGTCGATTTCGTTGA 1689 44.88 MGKKGSCFFGVRKVLSHHHEKKDKKPNKYKNKWIQEEENVDVISFLEQSQLEVLAQPPMIETSELAHLEAAEPSVAEAQLAVEVEYPPSFIPRRPEMSEETAAIMIQAAFRGYTARRALRALKASMRLKALAQGQSVKRQVAHTLKYMQTITHLQAEIHKRRIRMSEENQALHRQLYKKREKHVEKLKSSMDNDWNHSTQSKAQIEAKLLNKQVGALRRERALAYAYSHQPTWKFFSRTATPSFMDPNNPHWGWSWLERWMAARPWELRITDEQMDHISVMSIATRASVVDIIQIFSRRDQIFYTKPSLRSPTRQLLHRHHSPSTSKPLSPSSSRNKKNAANSGISSWGAYDVNSKLFRRHTIGGSSLKDDTTIASSPSVSSHTTPSKAVKTPSRFASSSRTEKKGTVEKGSTSTSSARKQLSFTAPPVKPRRRSSPPLPKAKPWATTTILLSRGKGSGLRIRVQAYREVFYLSRSINQSLAPYSTRLLLIFPSNLCYNGDLELSILFVSFCRNGLLLSPVEMCDTHRFQIRLFGFCWFRIRFLAVLLLFNRLSTPPVCRFR 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6912495 6918886 - CmaCh04G013550.1 Cma04g01355 292436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01355 562 MobiDBLite consensus disorder prediction 364 443 - -
Cma04g01355 562 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Cma04g01355 562 PANTHER IQ-DOMAIN 5-RELATED 72 438 - -
Cma04g01355 562 MobiDBLite consensus disorder prediction 367 401 - -
Cma04g01355 562 Pfam IQ calmodulin-binding motif 102 120 IPR000048 GO:0005515
Cma04g01355 562 MobiDBLite consensus disorder prediction 409 423 - -
Cma04g01355 562 SMART iq_5 98 120 IPR000048 GO:0005515
Cma04g01355 562 MobiDBLite consensus disorder prediction 313 345 - -
Cma04g01355 562 MobiDBLite consensus disorder prediction 322 345 - -
Cma04g01355 562 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 72 438 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01355 Cma15g00434 CCT
Cma04g01355 Cma04g02600 CCT
Cma04g01355 Cma15g00434 ECH
Cma04g02600 Cma04g01355 ECH
Cma04g01355 Cma04g02600 ECH
Cma04g01355 Cma18g00883 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01355 Cma-Chr4:6912495 Cma07g00937 Cma-Chr7:4504725 5.52E-64 dispersed
Cma15g00434 Cma-Chr15:1943695 Cma04g01355 Cma-Chr4:6912495 3.21E-106 wgd
Cma18g00883 Cma-Chr18:7634836 Cma04g01355 Cma-Chr4:6912495 2.00E-136 wgd
Cma04g01355 Cma-Chr4:6912495 Cma04g02600 Cma-Chr4:17780558 5.28E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01355 - - csv:101223184 516.153