Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01369 ATGGCGAAAGACGACGCGACGGCGGCGAGAGGGTTCTCAGGCAAGGACTACCACGACCCTCCACCGGCTCCGCTCTTCGACGCGGCGGAGCTCGGCAAGTGGTCTTTTTACAGGGCCATCATTGCTGAGTTCATCGCCACTCTTCTCTTTCTCTATGTCACCATCTTGACTGTGATTGGCTACAGTAGCCAGACCGACACTGACAAACCCGGCGCCGACGCTTGCGACGGCGTTGGGATCCTCGGCATCGCTTGGGCCTTTGGCGGCATGATCTTCGTCCTTGTCTACTGCACCGCCGGCATTTCAGGTGGGCACATCAACCCGGCGGTGACATTCGGGCTATTCTTAGCTCGGAAGGTGTCGTTGGTGCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTAGGGGCCGTATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCCTACTACCACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCTCGGCTACTCTAAAGGCACCGGCTTGGGGGCTGAAATCGTCGGTACATTTATCTTGGTCTACACCGTCTTCTCCGCCACTGATCCCAAGCGAAGCGCTAGAGACTCCCATGTCCCTGTATTGGCTCCTCTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACGATCCCCATCACCGGCACCGGCATCAACCCGGCTAGAAGCTTCGGCCCGGCTGTTATCTTGAACCATGAAAAACCGTGGAATGATCAATGGATATTTTGGGTTGGGCCATTCGTGGGAGCCGCCATCGCAGCCTTCTACCACCAGTTCATTTTGAGGGCCGGCGCCGTCAAGGCTCTCGGCTCTTTCAGGAGCAGCCCATCCGTTTGA 864 57.99 MAKDDATAARGFSGKDYHDPPPAPLFDAAELGKWSFYRAIIAEFIATLLFLYVTILTVIGYSSQTDTDKPGADACDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAVCGTGLVKAFQKAYYHKYGGGANQLALGYSKGTGLGAEIVGTFILVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVILNHEKPWNDQWIFWVGPFVGAAIAAFYHQFILRAGAVKALGSFRSSPSV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7014589 7016936 - CmaCh04G013690.1 Cma04g01369 292450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01369 287 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01369 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01369 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01369 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01369 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01369 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01369 287 PANTHER AQUAPORIN PIP2-4-RELATED 9 284 - -
Cma04g01369 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 284 IPR034294 -
Cma04g01369 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01369 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cma04g01369 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cma04g01369 287 TIGRFAM MIP: MIP family channel proteins 42 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g01369 287 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Cma04g01369 287 CDD MIP 38 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01369 Cma04g02577 CCT
Cma04g01369 Cma04g02577 ECH
Cma04g02577 Cma04g01369 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01369 Cma-Chr4:7014589 Cma07g00928 Cma-Chr7:4452094 7.12E-175 dispersed
Cma07g00926 Cma-Chr7:4445014 Cma04g01369 Cma-Chr4:7014589 1.32E-151 dispersed
Cma15g00457 Cma-Chr15:2035913 Cma04g01369 Cma-Chr4:7014589 1.04E-07 wgd
Cma18g00891 Cma-Chr18:7695873 Cma04g01369 Cma-Chr4:7014589 3.54E-173 wgd
Cma04g01369 Cma-Chr4:7014589 Cma04g02577 Cma-Chr4:17684866 4.01E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01369 K09872 - csv:101204956 551.977