Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01383 ATGGGTGGGTCGGAGAAGGAGTTGAAAGATTTTGTGAGGGAGATTTCGGAGCTTCCTGAGTGCAATGGCGTGTGTAAGAAGATGTATGGGGAGCTGATTCGAAGAGTTAAGTTGTTGAGTCCTATGTTTGAGGAATTGAGAGATGGAGAAGAAGAACTTGGATTAGATGTTCTTAAGAGCTTGGAGTTGCTTACAACTGCTTTGGATTCTGCTATGGAGCTTCTTAGGTCGGTCAACCGAGGTAGCAAGCTCTATCAGGCTTTGCAATTGGAGAAAATGGTACTTGAGTTTCAACATAAGACACAAGATATTGCAGCAGCACTCAGCAAGCTTCCCATCGACGAGCTCGGGATCTCAGACGAGGTTTGGGAACAGACTGAACTTGTTCAATCCCAATTCAAACGAGCGAAGGAGAGATTACATTTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACACGAAGAAGAAGACCCTAACCTTGAAATATTGAAAAGACTTTCTGAAAAGCTGCATCTTCGAACTATAAACAATCTGAAGAAAGAGTCTCTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCGGGGGGTGTTTTCGGAAAAATGTCATCCATTTTAAAGAAGCTGAAGGATTTTGTACAAACAGAAAACCCAGAAGTTGAAACTTCCCAAGATAAAACAAGTATCATCATTGAACACAAATCTCCTGTCATCCCGGACGATTTCAGATGCCCCATATCTCTTGAAATGATGAGGGATCCTGTCGTTGTCTCGACCGGGCAGACTTATGAGAGATCATGCATTCAGAAATGGTTGGATTCAGGGCACATAACCTGTCCAAGATCTCAGCAGGTTTTAGTCCGTACAGCCTTAACCCCAAATTACGTTTTGAAGAGCCTGATTGCTTTGTGGTGTGATAACAATGGCGTTGAACTGCCAAGCAAGCAAGGTAGCTGTGTAAATAAGAAACCTGGAAACAGTATTTCAGACTGCGATCGGGCGGCCATCGATGCCTTACTGGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGCGCTCCGGTTACTAGCAAAGAGGAATTCAGATAACCGAATCTGTATTGCCGAGGCAGGAGCCATTCCATTCCTTGTCGAACTATTATCCTCAAATGATACTAGGACCAAGGAGCATGCAGTTACAGCAATGTTGAATCTTTCAATCAATGATGGTAATAAAAGAAGGATAGTCGATTTACGAGCCTTACCTGCCATAGTAGAAGTGTTGAAGAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGCTTATCCGTTATCGACGAGAACAAGGTTGCGATCGGAGCAGCCCGGGCAATTCCTTCTCTTATCAGTTTGCTTTGTGAAGGTACTACCAGAGGAAAGAAGGATGCAGCCGCTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAGTAAGAGCAGGCATTGTTAATCCACTTATGGGGTTTCTGAAAGATTCTGGAGGTGGCATGGTGGATGAAGCTCTAGCCATTTTGGCCATTCTTGCAACTCACCATGAAGGGAAGATGGCAATAAGGCAAACTGAGCCGACAGCAATTCTTTTAGAGTTCATCAGAACTGGTTCTCCACGAAACCAGGAGAATGCTGCTGCTGTGTTGTGGTCGCTTTGCAGTACTGATTTTGAGCAGTTGAAGGTAGCTGGGGAACATGGTGCAGAAGTGGCATTAATGGAAGTATCTGAGAATGGCACAGAAAGAGCAAAGAGGAAAGCAGGAAGCATTCTAGAGCTCTTTCAACGCTTTGATGGACCATCTGCTAATCGATAA 1869 44.3 MGGSEKELKDFVREISELPECNGVCKKMYGELIRRVKLLSPMFEELRDGEEELGLDVLKSLELLTTALDSAMELLRSVNRGSKLYQALQLEKMVLEFQHKTQDIAAALSKLPIDELGISDEVWEQTELVQSQFKRAKERLHLADAQLDKDLAILHEEEDPNLEILKRLSEKLHLRTINNLKKESLAIHELVISSDGDPGGVFGKMSSILKKLKDFVQTENPEVETSQDKTSIIIEHKSPVIPDDFRCPISLEMMRDPVVVSTGQTYERSCIQKWLDSGHITCPRSQQVLVRTALTPNYVLKSLIALWCDNNGVELPSKQGSCVNKKPGNSISDCDRAAIDALLVKLVNGSPEQKRSAAGALRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTKEHAVTAMLNLSINDGNKRRIVDLRALPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAARAIPSLISLLCEGTTRGKKDAAAAIFNLSIYQGNKARAVRAGIVNPLMGFLKDSGGGMVDEALAILAILATHHEGKMAIRQTEPTAILLEFIRTGSPRNQENAAAVLWSLCSTDFEQLKVAGEHGAEVALMEVSENGTERAKRKAGSILELFQRFDGPSANR 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7077270 7079837 + CmaCh04G013830.1 Cma04g01383 292464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01383 622 Gene3D - 516 621 IPR011989 -
Cma04g01383 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 314 IPR013083 -
Cma04g01383 622 Gene3D - 6 114 IPR036537 GO:0007166
Cma04g01383 622 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Cma04g01383 622 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 379 421 IPR000225 GO:0005515
Cma04g01383 622 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 7 615 - -
Cma04g01383 622 PANTHER U BOX DOMAIN-CONTAINING 7 615 - -
Cma04g01383 622 SMART arm_5 331 366 IPR000225 GO:0005515
Cma04g01383 622 SMART arm_5 409 449 IPR000225 GO:0005515
Cma04g01383 622 SMART arm_5 532 572 IPR000225 GO:0005515
Cma04g01383 622 SMART arm_5 491 531 IPR000225 GO:0005515
Cma04g01383 622 SMART arm_5 450 490 IPR000225 GO:0005515
Cma04g01383 622 SMART arm_5 368 408 IPR000225 GO:0005515
Cma04g01383 622 Gene3D - 416 515 IPR011989 -
Cma04g01383 622 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
Cma04g01383 622 SUPERFAMILY ARM repeat 336 611 IPR016024 -
Cma04g01383 622 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Cma04g01383 622 Pfam Armadillo/beta-catenin-like repeat 368 407 IPR000225 GO:0005515
Cma04g01383 622 Gene3D - 329 415 IPR011989 -
Cma04g01383 622 SUPERFAMILY RING/U-box 241 315 - -
Cma04g01383 622 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01383 Cma18g00906 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01383 Cma-Chr4:7077270 Cma13g00132 Cma-Chr13:899216 0 dispersed
Cma18g00906 Cma-Chr18:7786736 Cma04g01383 Cma-Chr4:7077270 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01383 - - csv:101221065 1007.67