Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01389 ATGGTGGCCGGCGGTGGAATCTCCGGGTGCTCCGACATCAGCAGCATCGCCGTCCACGTCATCACAGGGAGGTGGTTCGTGGTGTTTGCTTCCCTACTAATCATGGCGGCAGCTGGAGCAACCTACATGTTCAGCTTGTATTCCAGCGACATTAAGTCAGTTTTAGGTTACGACCAAACCACGTTGAATTTGTTGAGTTTTTTCAAGGATTTGGGTGCAAACGTGGGCGTTTTGTCTGGGCTTATCAACGAGGTTACACCGCCGTGGGTGGTTCTATCCATCGGCGCCGTTATGAATTTCTTTGGTTACTTCATGATTTGGCTCGCCGTTACAGGAAAGATCTCTGCCCCTAAAGTTTGGCAAATGTGTCTCTATATTTGTATTGGAGCTAATTCTCAATCCTTTGCCAATACTGGTTCCCTTGTTACATGTGTCAAGAACTTTCCCGAAAGTCGAGGCGTTGTTCTCGGTATCTTGAAGGGCTACGTTGGGCTGAGCGGCGCCATAATCACACAACTCTTCCACGCTTTTTACGGCGGCGACACCAAATCTTTAATTCTCCTCATCGGATGGCTGCCGGCGGCGATATCCTTTGCATTTTTACGAACAATTCGGATAATGAAAGTGATCCGACAGCCAAACGAGCTCAAAGTCTTCTACAATTTCCTCTACATTTCTCTAGCTCTCGCCGGATTTCTAATGCTAATGATCATCATAGAAAGCAAAACAGAGTTCAGTCAGAGCGGATATGGCGGCAGCGCCGCCGTTGTCCTTCTCCTCCTCTTCCTCCCACTCGCCGTCGTCATCATTGAAGAATACAATCTCTGGAACCTCAAAACCGCCGCCGCCACCGCCGCTGCCATTAGATCTCCAAATCACCCTGTTCAAATCGTAACAGAGAAAGTCCCAAAAACAGAGCATCAAAAACAACCATCATGCTGGACAACAATCTTCAACCCACCAGAACGCGGCGAGGATTTCACAATTCTCCAAGCCCTTTTCAGTGTTGACATGTTTATTTTATTCTTAGCAGCAATCTGCGGCGTCGGCGGAACATTAACAGCCATCGACAATTTGGGTCAAATCGGAATGTCTTTAGGATACCCAAAACAGAGCATTAGCACATTTGTAACACTCGTTAGCATATGGAATTACCTCGGCCGAGTAACCTCTGGTTTCGTCTCTGAAATCGTCTTAACTAAATACAAATTCCCTCGCCCTTTAATGCTCTCAATGACCCTTCTCGTGTCCTGTGTCGGCCATTTGATGATAGCATTCGATGTCCCAAATGGGCTTTACGTGGCTTCCATCGTAATCGGATTCTGCTTCGGAGCACAGTGGCCGTTGATTTTCGCCATAATTTCAGAGCTATTTGGGCTGAAATATTACTCCACGCTTTACAACTTCGGGTCGGTGGCGAGCCCAATTGGGCTTTATGTTCTGAACGTGAAAGTGGCCGGAAATTTCTACGACAGAGAGGCGGAGAAGCAGCTGAGAGCAAAAGGGATTGTTAGAAAAACAGGGGAAGAGCTGAAGTGCTTTGGAGGGGAGTGTTTTAAGCTCTCGTTTCTGGTAATCACCGGAGTTACTTTGTTGGGTATGTTTGTTTCATTGATTTTAGTGATTAGAACGAGGAGTTTCTACAAGAGTGATATTTATAAGAAGTTTCGAGACGAAGCTGAAACAGAGATAGCCGGAAATGGCGCTGTAGTGGCCGCCGAACCGCCGGAAGAGACGAGAAAATGA 1746 47.08 MVAGGGISGCSDISSIAVHVITGRWFVVFASLLIMAAAGATYMFSLYSSDIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVMNFFGYFMIWLAVTGKISAPKVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLFHAFYGGDTKSLILLIGWLPAAISFAFLRTIRIMKVIRQPNELKVFYNFLYISLALAGFLMLMIIIESKTEFSQSGYGGSAAVVLLLLFLPLAVVIIEEYNLWNLKTAAATAAAIRSPNHPVQIVTEKVPKTEHQKQPSCWTTIFNPPERGEDFTILQALFSVDMFILFLAAICGVGGTLTAIDNLGQIGMSLGYPKQSISTFVTLVSIWNYLGRVTSGFVSEIVLTKYKFPRPLMLSMTLLVSCVGHLMIAFDVPNGLYVASIVIGFCFGAQWPLIFAIISELFGLKYYSTLYNFGSVASPIGLYVLNVKVAGNFYDREAEKQLRAKGIVRKTGEELKCFGGECFKLSFLVITGVTLLGMFVSLILVIRTRSFYKSDIYKKFRDEAETEIAGNGAVVAAEPPEETRK 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7099324 7101292 + CmaCh04G013890.1 Cma04g01389 292470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01389 581 Gene3D MFS general substrate transporter like domains 334 549 IPR036259 -
Cma04g01389 581 PANTHER MFS TRANSPORTER 9 564 - -
Cma04g01389 581 SUPERFAMILY MFS general substrate transporter 24 550 IPR036259 -
Cma04g01389 581 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 564 - -
Cma04g01389 581 CDD MFS_Mch1p_like 23 534 - -
Cma04g01389 581 Pfam Nodulin-like 24 269 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01200 Cma-Chr3:8010204 Cma04g01389 Cma-Chr4:7099324 0 dispersed
Cma04g01389 Cma-Chr4:7099324 Cma13g00226 Cma-Chr13:1767532 0 dispersed
Cma04g01389 Cma-Chr4:7099324 Cma04g01390 Cma-Chr4:7104108 0 tandem
Cma15g00501 Cma-Chr15:2251275 Cma04g01389 Cma-Chr4:7099324 0 wgd
Cma18g00910 Cma-Chr18:7807517 Cma04g01389 Cma-Chr4:7099324 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01389 - - csv:101204293 1003.05