Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01390 ATGGACCCAATCTCTGCAGGGTTCAACACCAAATCCTTCACCCTCAAACTAATCAAAGGGCCATGGTTCATGATGTTCGCGTCCTTCCTTATTATGTCCATGGCCGGCATACCTTACATGTTCGGCCTCTACTCCGGCACCATCAAATCTGTATTGGGTTACGACCAAACCACCCTTAATTTCATCAGCTTCTTCAAAGATGTCGGCACCACCGTCGGTGTCTTGGCCGGCTTAATCAACGAAGTAACCCCACCATGGTCCATTCTTGCCATGGGAGCTCTTCTCAATTTCTTCGGTTACTTCATGATTTGGCTCTCTGTTTCCGAGAAGATCCCCACCCATGTCTGGCTCATGTGCTTATATATCTGTGTCGGAGCCAACGCTACAACGTTTGCTAACACCGGCGCCCTCGTCACCTGCGTTAAGAATTACCCGCAACGGCGCGGCGTCGTCATCGGAATTCTTAAGGGCTACATGGGGTTGAGTGGGGCCATTGTTACGCAGCTCTACCATGCGATTTATGGGAAAGATGAAAAGTCGTTGATTTTGTTGTTGGGTTGGTTGCCGGCGGTGATTTCGTTTATTTTCTTGCCGACGGTGCGGCGGATGAAGGTGGAGCACGAGGAGGATGAGCTGAGGGTTTTTTACAGGTTTTTGTATATCTCGTTGGGGCTGGCCGGGTTTTTGATGTTGATGATAATTTTGCAGCAGAAATTTAGTTTTGGGAGAGGGGAGTACGGTGGCAGTGCGGCGGTGGTTACATTTTTGCTCCTTTTGCCGATTGCGGTTGTTGTTGCTCAGGAATTCAAGGCGTGGCGGCGCTTGAATCAGCCTCCGGTGGTTGAGAATGGGCTTTCCTACACGCCGGGGACAGCGGCGTTGAAGAACACGACACCAATGGCACTCCTCCCGAAGAAACCAAAGGAGACAGAACCAGCTAGCAGCACCAAAATTCAATGGTGGAAAAACGTGTTCAATCCGCCAGAAAGAGGAGAAGATTGGACAATTCTCCAAGCTCTGTTCAGCTTCGACATGTTCCTCCTCTTTCTCGCCACCGCGTGCGGCGTCGGCGGGACACTAACCGCCATCGACAACCTCGGACAAATCGGACAGTCACAAGATTACCCAAAGAAAAGCATAAGCACATTCGTGTCGCTTGTCAGCATATGGAATTACCTCGGCAGAGTAATGGCCGGATTCCTCTCCGAACATTTGCTAATCAAATACAGATTCCCTCGTCCTTCAATGCTCACAATCGTTCTTCTTCTTTCCTGCATCGCCCATCTTCTGATCGCCTTCAACCCGAGCGGCGGCCTCTACATTGCCTCTGTTTTAACCGGATTCTGCTACGGCGCCCAGTGGCCTCTGCTTTTCGCCATCGTCTCAGAGGTTTTTGGGCTAAAATATTACGCGACGCTGTATAATTTCGGGTCAGTGGCGAGCCCTGTGGGGCTTTATTTGCTGAATGTGAATGTGGCGGGGTATTTATACGACAAGGAGGCGAAGAAGCAGCTGGCGGCGACGGGGAGGATAAGAAAAACAGGGGAGGAGTTGATTTGTAATGGGACGGTGTGTTTCAAGCTGTCTTTTGTGATTATTACGGCGGTGAGTTTGTTTGGGGCTTTGGTTTCTTTGGTTTTGGTGTTGAGAACGAGGAAGTTTTATAAGAGTGACATTTATCGGAGATTTAGAGAGGCGGAGGAGGCGGAGAAGGCGGAGAAGGCGGAGAAGGAAGACGGCAGTGGGTTCATAAACGGCGGCGATATAGTGGAGGACTCGAAACAGGGGATTAGGCAATGA 1800 50.33 MDPISAGFNTKSFTLKLIKGPWFMMFASFLIMSMAGIPYMFGLYSGTIKSVLGYDQTTLNFISFFKDVGTTVGVLAGLINEVTPPWSILAMGALLNFFGYFMIWLSVSEKIPTHVWLMCLYICVGANATTFANTGALVTCVKNYPQRRGVVIGILKGYMGLSGAIVTQLYHAIYGKDEKSLILLLGWLPAVISFIFLPTVRRMKVEHEEDELRVFYRFLYISLGLAGFLMLMIILQQKFSFGRGEYGGSAAVVTFLLLLPIAVVVAQEFKAWRRLNQPPVVENGLSYTPGTAALKNTTPMALLPKKPKETEPASSTKIQWWKNVFNPPERGEDWTILQALFSFDMFLLFLATACGVGGTLTAIDNLGQIGQSQDYPKKSISTFVSLVSIWNYLGRVMAGFLSEHLLIKYRFPRPSMLTIVLLLSCIAHLLIAFNPSGGLYIASVLTGFCYGAQWPLLFAIVSEVFGLKYYATLYNFGSVASPVGLYLLNVNVAGYLYDKEAKKQLAATGRIRKTGEELICNGTVCFKLSFVIITAVSLFGALVSLVLVLRTRKFYKSDIYRRFREAEEAEKAEKAEKEDGSGFINGGDIVEDSKQGIRQ 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7104108 7106001 + CmaCh04G013900.1 Cma04g01390 292471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01390 599 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 577 - -
Cma04g01390 599 Pfam Major Facilitator Superfamily 345 563 IPR011701 GO:0022857|GO:0055085
Cma04g01390 599 MobiDBLite consensus disorder prediction 570 599 - -
Cma04g01390 599 Pfam Nodulin-like 21 265 IPR010658 -
Cma04g01390 599 PANTHER MFS TRANSPORTER 9 577 - -
Cma04g01390 599 SUPERFAMILY MFS general substrate transporter 12 207 IPR036259 -
Cma04g01390 599 SUPERFAMILY MFS general substrate transporter 220 556 IPR036259 -
Cma04g01390 599 CDD MFS_Mch1p_like 20 541 - -
Cma04g01390 599 Gene3D MFS general substrate transporter like domains 333 556 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01390 Cma-Chr4:7104108 Cma15g00501 Cma-Chr15:2251275 0 dispersed
Cma04g01389 Cma-Chr4:7099324 Cma04g01390 Cma-Chr4:7104108 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01390 - - csv:101205503 1031.94