Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01392 ATGTTTCTTGTTCTTACCATTCTCTTGATATGGATGTCTGGTTCTATCTTATGTGTCGATTCTGCTGCTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGACTCTGTTGCTGATGAACTTCAAAGGACAGTCAATGCATCTGTATGGAGAAGACAAATGCTGTCCGAATCGAAGGATCAAACTTCCTCTTGCCTCACCGGCAACCCCATCGACGATTGCTGGCGGTGCGACCCAAATTGGGCGGCGAACCGGCAGCGACTAGCCGACTGCGGCATCGGGTTCGGCCGCGACGCCATGGGTGGCAAAGGCGGCAAAATCTACATCGTTACCGACTCGTCGGATTCGGATCCGACGAACCCCACTCCGGGAACTCTCCGCCACGCTGTGATCCAATTCGAACCCCTGTGGATCATCTTCTCCGCCGACATGAACATCAAGCTCAAATACGAACTTATCATCAACAACTTCAAAACCATCGACGGCCGTGGCGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATCCATTCCGTGTCCAATATCATCATCCACAACATCCACGTGCACCACTGCAAACCCTCCGGCAATGCCAACATAAGGTCGACCCCAAGTCATGTGGGGCATTGGGGGCTGTCGGACGGAGATGGGATATCGATATTCAGCTCGCGGAAGATTTGGATCGACCATTGCTCGCTTTCATACTGCAAAGATGGGCTGATAGATGCAACAATGGGATCGACGGGGATAACAATATCAAACAGCTACTTCTCGCACCATGACAAGGTGATGCTGTTGGGGCACGACGACAAGTACGCGCAGGACTCAGGGATGCAAGTCACCATTGCGTTCAACCACTTCGGCGAGGCGCTGAGCCAACGCATGCCGCGTTGTAGGTATGGCTACATTCATGTCGTCAACAATGACTTCACCGCTTGGGAAATGTATGCCATTGGCGGCAGTGCCCGCCCAACTATTAACAGTCAGGGTAACCGTTACACCGCGCCGGTGGACCCTAATGCCAAAGAGGTGACGAAACGTTTAGACACGGCGGAGACGGAGTGGACGGCGTGGAATTGGCGGTCGGAGGGTGATATTTTGGTGAACGGCGCATTTTTTGTGCCGTCCGGTGCCGGACTTAGCACCCAGTACGGTAAGGCCTCCAGCGTCGAGCCTAAGTCGGTGGCTCTCATCAATCAGCTCACTATGAACGCCGGCGTTTTCGGCGCCCCCAGATACAATGCAGGTCAAGGAATTGTATATCAAGGGTTCAATGGTAGCAACGGAAGCAACGGTAGCGATGGCGATGATGATGGTGGATATGGTGGTAACACTGCCATAAATAACAATCCAATTTATGGGAATGGCGGTGGTAACGATGATGACTACCACAGAATGATATTTAAAGGGGATGCAGGAAGATCCGGTGCTAGATCCAGATTCCAATTCTGGATTTAA 1467 52.22 MFLVLTILLIWMSGSILCVDSAASFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSESKDQTSSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDSDPTNPTPGTLRHAVIQFEPLWIIFSADMNIKLKYELIINNFKTIDGRGANVHITGGGCITIHSVSNIIIHNIHVHHCKPSGNANIRSTPSHVGHWGLSDGDGISIFSSRKIWIDHCSLSYCKDGLIDATMGSTGITISNSYFSHHDKVMLLGHDDKYAQDSGMQVTIAFNHFGEALSQRMPRCRYGYIHVVNNDFTAWEMYAIGGSARPTINSQGNRYTAPVDPNAKEVTKRLDTAETEWTAWNWRSEGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVFGAPRYNAGQGIVYQGFNGSNGSNGSDGDDDGGYGGNTAINNNPIYGNGGGNDDDYHRMIFKGDAGRSGARSRFQFWI 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7107387 7112159 - CmaCh04G013920.1 Cma04g01392 292473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01392 488 SUPERFAMILY Pectin lyase-like 60 388 IPR011050 -
Cma04g01392 488 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Cma04g01392 488 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Cma04g01392 488 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Cma04g01392 488 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Cma04g01392 488 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cma04g01392 488 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Cma04g01392 488 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Cma04g01392 488 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Cma04g01392 488 PANTHER PECTATE LYASE 7 429 - -
Cma04g01392 488 Gene3D - 70 412 IPR012334 -
Cma04g01392 488 Pfam Pectate lyase 154 334 IPR002022 -
Cma04g01392 488 PANTHER PECTATE LYASE 18-RELATED 7 429 IPR045032 GO:0030570
Cma04g01392 488 SMART amb_all 145 342 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01392 Cma-Chr4:7107387 Cma07g00892 Cma-Chr7:4221789 0 dispersed
Cma15g00500 Cma-Chr15:2246288 Cma04g01392 Cma-Chr4:7107387 0 wgd
Cma18g00911 Cma-Chr18:7813567 Cma04g01392 Cma-Chr4:7107387 0 wgd
Cma04g01392 Cma-Chr4:7107387 Cma04g02549 Cma-Chr4:17458857 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01392 K01728 - csv:101205739 816.994