Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01404 ATGAACTGTCTTCAAAACCTGTCAATATCATCATCTTTGCCGTTCCAGAGCTTCAAATGCCGACAGAGAAAGCCTGAATTCCAGCTCCGCAATCTGGTGATAAGGAACTTTGCGGATCTACACCGACGTTTTACCGTGAAGGCAGTATCTGGCTCTACATCAAGTGCCGAAATGAGTGGAGCTGAAGTTGATGATGCCGAGCCAAAGGAGGAAAAATCTGAAATATATAGCCATAACATGACAGAAGCTATGGGGGCTGTATTGACATATAGACATGAGCTGGGAATGAACTACAACTTCATTCGTCCAGATTTAATTGTAGGATCGTGCCTACAGACTCCAGAGGATGTTGACAAGCTTCGCAGCATTGGAGTAAAAACAATTTTCTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACGTTTGATGATATTGAACATTTGCGAGCTCAGATAAGGGATTTTGATGCATTCGACCTACGGCTAAGGTTACCAGCTGTTGTAAGTAAATTGCATAAAGCCATAAACCGAAATGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCGATGGCATACATGTTCTGGGTTCAAGGCTACACACTCAATGAGGCTTTAGAATTACTGCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAGTGCAACGGCCGATATTCTTTCAGGATTTAAAAACAAGCCTGTCACTTTATCATGGGAGAATGACCAATGCTCAACTGTAGAAGTATCTGGGCTTGATATTGGATGGGGCCAGAGAATTCCATTAAAATTCGACAAGGAACGAGGTGCATGGATTCTCAATAAGGAACTGCCGGAAGGACGATACGAATACAAGTATATTATTGATGGTGTATGGACGTGCAACGAAAACGAGCCGGTCACTCCCCCCAACAAAGATGGCCACATCAACAATTTCATTGAAGTGGTTGAAGATGAGGATCCAGGTAGTGATAGAACCATTCTTCGGGCAAGATTAACCGGAGATGAACCAGAACTCACGACCGAAGAAAGGAGCAAAATAATACAATTTCTTGAAGATTGCCCAGATGAAAATTGA 1143 42.69 MNCLQNLSISSSLPFQSFKCRQRKPEFQLRNLVIRNFADLHRRFTVKAVSGSTSSAEMSGAEVDDAEPKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRSIGVKTIFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYTLNEALELLLSKRSCFPKIDAIKSATADILSGFKNKPVTLSWENDQCSTVEVSGLDIGWGQRIPLKFDKERGAWILNKELPEGRYEYKYIIDGVWTCNENEPVTPPNKDGHINNFIEVVEDEDPGSDRTILRARLTGDEPELTTEERSKIIQFLEDCPDEN 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7177887 7184594 - CmaCh04G014040.1 Cma04g01404 292485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01404 380 CDD E_set_AMPKbeta_like_N 256 337 - -
Cma04g01404 380 CDD DSP_laforin-like 96 243 IPR045204 GO:0019203|GO:0046838
Cma04g01404 380 Gene3D Immunoglobulins 252 344 IPR013783 -
Cma04g01404 380 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 232 IPR000387 GO:0016311|GO:0016791
Cma04g01404 380 SMART dsp_5 97 247 IPR020422 GO:0006470|GO:0008138
Cma04g01404 380 Pfam Glycogen recognition site of AMP-activated protein kinase 256 340 IPR032640 -
Cma04g01404 380 Pfam Dual specificity phosphatase, catalytic domain 153 235 IPR000340 GO:0008138|GO:0016311
Cma04g01404 380 ProSiteProfiles Dual specificity protein phosphatase domain profile. 97 254 IPR020422 GO:0006470|GO:0008138
Cma04g01404 380 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 239 IPR029021 -
Cma04g01404 380 Gene3D Protein tyrosine phosphatase superfamily 90 372 IPR029021 -
Cma04g01404 380 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 379 IPR030079 GO:0005982|GO:0007623|GO:0019203
Cma04g01404 380 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 379 - -
Cma04g01404 380 SUPERFAMILY E set domains 255 337 IPR014756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01431 Cma-Chr11:9430644 Cma04g01404 Cma-Chr4:7177887 1.28E-30 transposed
Cma18g00926 Cma-Chr18:7932424 Cma04g01404 Cma-Chr4:7177887 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01404 - - csv:101212390 712.22