Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01407 | ATGTTGGCAATGGAGAAGGATTTTGATGCTAAGTTGATGATTCAGGGCAACGGTTCTAATGGCGCCAATGTTCCGAGATCCAAGAGCTTTTCCTTTCGTGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGGAAGATATATGGAGTTGGTTCATATTCCAAGGTTGTAAGGGCGAAGAAGAAGGACACAGGAACTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTTCTTGATCAGTTGGATCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCTTGTGAAGGCGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGAAGAAGCTCGGTTTTATACGGCCGAAGTGGTCGATGCCCTCGAATACATACACAACATGGGATTGATACACCGAGATATCAAGCCTGAAAATTTGCTACTTACTTCTGATGGACATATCAAAATAGCTGATTTTGGCAGTGTAAAGCCGATGGTCGATAGTCGAATTACGGTTCTTCCAAATGCAGCATCGGATGATAAAGCTTGTACATTTGTGGGCACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCTTCCCCTGCAACTTTTGGAAATGACCTTTGGGCTCTCGGGTGCACCGTGTACCAGATGCTGTCGGGGACCTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCACGAGATATAAAATTCCCGAGCTATTTTTCGGAGCAAGCCAGGGATCTCATCGACCACCTATTGGATTTAGATCCGATCAAGAGACCGGGCGCCGGAGCTGAGGGCTATGCATCCCTCAAGAATCATCCCTTCTTTGATGGGGTTGATTGGAAGAACATAAGAACACAAACCCCTCCCAGGCTTGCTTTAGAAGCTTCGACCAATTCAAACGAGACCGACGATGGCACCGAGTCCTCTTGGAATCCTTCACATATTGGTGACAGTACATCGAGACAAAACGATGGGAATGCTGGTTCTGCATCAACTTCCGAAGGATCAAATCATATTACTCGACTTGCATCGATAGACTCCTTCGATTCAAAATGGCAACAATTCCTTGATCCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAAATTCAAAAGCTATCAAGCAAAAAGGTTCAGCTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTTATTGTGAAGGGGAATATCATTTGGTCTGACAATCCTAATGATCTCAACATTCAAGTGACCAGTCCTTCAAATTTCAAGATCTGCACACCAAAAAAGATTGCCTCTTTTGAGGACGCGAAACATCGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA | 1470 | 42.86 | MLAMEKDFDAKLMIQGNGSNGANVPRSKSFSFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGTVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEEEARFYTAEVVDALEYIHNMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYASLKNHPFFDGVDWKNIRTQTPPRLALEASTNSNETDDGTESSWNPSHIGDSTSRQNDGNAGSASTSEGSNHITRLASIDSFDSKWQQFLDPGESVLMISMVKKIQKLSSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSNFKICTPKKIASFEDAKHRAWQWKKAIEGLQNR | 489 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7195047 | 7199175 | + | CmaCh04G014070.1 | Cma04g01407 | 292488 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01407 | 489 | SMART | serkin_6 | 44 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g01407 | 489 | CDD | STKc_PDK1 | 42 | 311 | IPR039046 | GO:0004674 | |
Cma04g01407 | 489 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 163 | 175 | IPR008271 | GO:0004672|GO:0006468 | |
Cma04g01407 | 489 | SUPERFAMILY | PH domain-like | 305 | 488 | - | - | |
Cma04g01407 | 489 | SUPERFAMILY | Protein kinase-like (PK-like) | 41 | 377 | IPR011009 | - | |
Cma04g01407 | 489 | Pfam | PH domain | 386 | 488 | IPR033931 | - | |
Cma04g01407 | 489 | Gene3D | Transferase(Phosphotransferase) domain 1 | 128 | 323 | - | - | |
Cma04g01407 | 489 | Gene3D | Phosphorylase Kinase; domain 1 | 42 | 127 | - | - | |
Cma04g01407 | 489 | Gene3D | - | 353 | 489 | IPR011993 | - | |
Cma04g01407 | 489 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 21 | 485 | - | - | |
Cma04g01407 | 489 | PANTHER | 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 | 21 | 485 | - | - | |
Cma04g01407 | 489 | ProSiteProfiles | Protein kinase domain profile. | 44 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g01407 | 489 | MobiDBLite | consensus disorder prediction | 325 | 372 | - | - | |
Cma04g01407 | 489 | Pfam | Protein kinase domain | 46 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g01407 | Cma18g00928 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01407 | Cma-Chr4:7195047 | Cma11g00178 | Cma-Chr11:931023 | 3.00E-62 | dispersed | |
Cma18g00928 | Cma-Chr18:7955626 | Cma04g01407 | Cma-Chr4:7195047 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68503 | PF00069 | Pkinase | 9.30E-66 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01407 | K06276 | - | csv:101212874 | 909.827 |