Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01418 ATGTCCGACAAATACACACACCCAGATCTCCGCCACCTCATGGCCAATGAACCCAACTTTCCGGCCATCCCACAAACCCTAGACTCCTTCTTCCACCACCACACTCACCTGACACGTGGCTTCTCTCCACTGCCACCACCGTCAGCGCTACCCAAGTTCCAGCCTATCCCGCTCGTCCTAACCGATCCCGCTACTTTTCCCAGCGGCCAGCTTCACTTTGGCTGTTCCGATAACTCCACAACAACTGCAGGCGGCGGTGGCGCCGCATCGTCCGCTCCATTTTCTCGGCGGAATAAGGCCGTGGATGGTGAATGGCGCCCCTATGGAAACGACGCCGTTGGGGTAAGTAATGGAGCTAACAGTAGATGGCCAAGACAGGAAACTCTCACTCTTCTTGAGATCAGATCTCTTCTTGATTCCAAGTTTAAAGAGAGTAATCAAAAAGGTCCTCTTTGGGATCAGGTTTCTAGGATGATGGAGGAGGAATACGGGTACAAAAGAAGTGGGAGGAAATGCAAAGAGAAGTTCGACAATTTATACAAATACTACAAGAAAACAAAGGAAGGTAAAACGGGGAGGCACGACGGGAAGCACTACAGATTCTTCCGGCAACTCGAAGCCATTTACGGCGACTGTAACCACCAATTATCATCCCCAGTTACGGGCGGAGAGAACCACGTAGAAGCTGGCGGAATAAGCCAAAGCTTTTCAATGTCGTCTGATTTCGAAACGTCGTCGTCAGGGAACTACCACGACGACGATCTGTCGGCCATAGCGTTTATGATGAATCAGAGGAGGGTGGAGAAAGGGAGAGAAGACGACATGTCGAAAGGGGAGGGTGTAGGGTGGAGAGAGGAGGTAGAGAGAATGGTGGATTCGAAGGTGAGGAGATTAATGGAAGTGCAGGAAAATTGGATGGAGAAGATTATGGCGAGCATTGAAGATGGAGAAAAGGAGAGAATTGTTAAAGAGGAAGAATGGAGGAAGAAAGAGGTGGCTAGGTTTGATCGTGAAATGCTAGAGTTTTGTGCGAGGGAGAGAGCTTGGGTTCGAGCTCGAGAAGCTGCTTTCATGGAGATTATCAACAATTTTTCTGGTAAAGGATAA 1107 49.41 MSDKYTHPDLRHLMANEPNFPAIPQTLDSFFHHHTHLTRGFSPLPPPSALPKFQPIPLVLTDPATFPSGQLHFGCSDNSTTTAGGGGAASSAPFSRRNKAVDGEWRPYGNDAVGVSNGANSRWPRQETLTLLEIRSLLDSKFKESNQKGPLWDQVSRMMEEEYGYKRSGRKCKEKFDNLYKYYKKTKEGKTGRHDGKHYRFFRQLEAIYGDCNHQLSSPVTGGENHVEAGGISQSFSMSSDFETSSSGNYHDDDLSAIAFMMNQRRVEKGREDDMSKGEGVGWREEVERMVDSKVRRLMEVQENWMEKIMASIEDGEKERIVKEEEWRKKEVARFDREMLEFCARERAWVRAREAAFMEIINNFSGKG 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7250979 7252918 + CmaCh04G014180.1 Cma04g01418 292499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01418 368 Gene3D - 123 185 - -
Cma04g01418 368 PANTHER - 13 366 - -
Cma04g01418 368 CDD GT1 121 187 - -
Cma04g01418 368 ProSiteProfiles Myb-like domain profile. 115 180 IPR001005 -
Cma04g01418 368 Pfam Myb/SANT-like DNA-binding domain 121 208 IPR044822 -
Cma04g01418 368 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 13 366 - -
Cma04g01418 368 Coils Coil 284 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01418 Cma-Chr4:7250979 Cma14g00286 Cma-Chr14:1217842 3.29E-83 dispersed
Cma06g00225 Cma-Chr6:1153663 Cma04g01418 Cma-Chr4:7250979 7.62E-14 dispersed
Cma14g00061 Cma-Chr14:265014 Cma04g01418 Cma-Chr4:7250979 2.46E-14 dispersed
Cma18g00935 Cma-Chr18:8020325 Cma04g01418 Cma-Chr4:7250979 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34868 PF13837 Myb_DNA-bind_4 8.90E-19 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01418 - - cpep:111802245 532.717