Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01421 ACCCATTCTCCTTCCTTCCCCTCCTCCTCTTCCTCCTCCTCTTCTTTATTCGTCTGCGGCGCCATTTTTACAGTTCCTCGCTTCGCTTCGACACCGTCCCCGCTTCCCACGGGTTCGGCTTTGATTCAAGCAGTCCTTGAACTGTGCGAATCTGTTTTCTGCGCCTTCTCAGTGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTGGTTTACAAAGCACGCGATCGCGTCACAAATGAGACTATTGCTTTGAAGAAGATCCGCTTGGAGCAGGAAGATGAGGGAGTGCCAAGCACAGCCATTCGTGAAATTTCACTGTTGAAGGAAATGCAGCATGGCAACATTGTAAGGTTACAAGATGTTGTGCACAGTGAGAAGCGCCTGTATCTTGTTTTTGAGTATCTGGATTTAGATTTGAAGAAGCATATGGACTCCTCTCCTGAATTTGCAAAGGATCCACGCCAAGTGAAAATGTTTCTTTACCAAATTCTTCGTGGCATTGCATATTGTCATTCACATAGAGTTCTTCATCGAGATCTAAAACCTCAAAATCTACTGATAGATCGTCGTACCAATGCCTTGAAGCTTGCTGACTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACAGAGCACCAGAAATATTACTTGGTTCCCGACATTACTCCACCCCTGTGGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGGTTAACCAGCGGCCATTATTCCCTGGAGACTCTGAGATTGATGAACTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTGCTTTCCCCAAGTGGCCTCCAAAGGACTTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGCATTGATCTTCTCTCTTTGACATCATGTTCCAGAAAATGCTGTGCTTGGATCCCACCAAAAGAGTCACCGCCAGGAGTGCCCTTGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGATTCTTCTTCCAATCCTCCTAAGGAGAGTGTCTATATAGCTCCTCTATTGTGTAGCCTTTTATGGGTTTTAATTGCGTGA 1146 44.94 THSPSFPSSSSSSSSLFVCGAIFTVPRFASTPSPLPTGSALIQAVLELCESVFCAFSVYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKDLASVVPNLEAAGIDLLSLTSCSRKCCAWIPPKESPPGVPLSMNTSKMLGLFPDSSSNPPKESVYIAPLLCSLLWVLIA 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7262456 7267279 + CmaCh04G014210.1 Cma04g01421 292502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01421 381 ProSiteProfiles Protein kinase domain profile. 59 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01421 381 Pfam Protein kinase domain 59 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01421 381 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Cma04g01421 381 Gene3D Transferase(Phosphotransferase) domain 1 141 335 - -
Cma04g01421 381 SMART serkin_6 59 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01421 381 PANTHER - 57 324 - -
Cma04g01421 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Cma04g01421 381 PANTHER CELL DIVISION PROTEIN KINASE 57 324 - -
Cma04g01421 381 CDD STKc_CDK1_CdkB_like 59 320 - -
Cma04g01421 381 SUPERFAMILY Protein kinase-like (PK-like) 54 320 IPR011009 -
Cma04g01421 381 Gene3D Phosphorylase Kinase; domain 1 57 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02040 Cma-Chr1:12990690 Cma04g01421 Cma-Chr4:7262456 2.95E-107 dispersed
Cma04g01421 Cma-Chr4:7262456 Cma07g01185 Cma-Chr7:6510948 5.10E-106 dispersed
Cma18g00938 Cma-Chr18:8044895 Cma04g01421 Cma-Chr4:7262456 3.47E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68504 PF00069 Pkinase 2.00E-71 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01421 K02206 - csv:116405161 528.094