Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01458 ATGAACTCAGCTCCCTTCATTTTCCTTTTCCTCCTCTCTCTCCGCCTCGCCGGAGCTTCCGATTCTCCTCCGCCGTCCGCCGTCCTCTGTAAATCCACTCTATATCCTAAGCTTTGCCGCTCCATTCTCTCCTCCATCCGATTCTCCCCCTCCGATCCATACGGCTACGGAAAATTCTCCGTCAGGAAGTGTCTCAAACAGGCGATCAAAATGTCGAGCGTTATCGGCGAGTATCTCGACCGAGGAGGCGATTCGAGGTTGAATCGGCAGGAGGTTGGCGCTCTGGAAGACTGCAGAGAGCTTTCCGATTCGAATGTGGAGTTTCTCCAGTCGATTGATGGCGTATTGGAGGCAGCGGAGGGCGTTGATGAGGAACTGATGGAGCGTATTGAGAGTATTTTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGACGGATTGGTGGAGTCGAGAAGTAGTTTGGGGAATGCGCTATCGGCACCGCTGTTGAGCGCGGGGGAGCTGTACAGTGTATCGTTAGGACTGGTTAAGAACTCGCTGTCGCGGCGGTGGAAGAAGCGGAGCCAGAAGGGAGACCGCGAGGGAGGGAATTTCCCGGCGGCTGCGCAGAGCAGAGAGCCATTGAACACGCTGATCAAGGGACTACATTCAATGGGTTCGTGCAACCAATCCACAAAGTGTTCGGGAAGGAAGCGCATGTTGACTGATTTGGGCACCACAGGAATTTTGATCAACAACACTGTGGTTGTTAGCTCAACCGGTGCTGACAACTTCACATCAATTGGAGATGCAATTTCATTTGCTCCCAACAATTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGACAAGGATACTACGACGAATATGTTGTCGTCCCCAAGTACAAAACCAATATAATGCTCATCGGAGATGGCATTAACCGAACCGTCATCACGGGGAACCATAACGTTGTTGATGGTTGGACGACTTACAATTCCTCTACCTTTACTGTTTATGGGGATGGATTTGTTGCAATAGACATGACATTCAGGAACACAGCAGGAGCAGAGAAGCACCAAGCAGTGGCAGTGAGGAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGCTTTGAGGGATATCAAGACACTCTTTATGTACATTCCTTAAGGCAATTCTACAGGGAATGCGACGTTTATGGCACCGTCGACTTCATTTTTGGCAACGCTGCTGCAGTTTTCCAGCAATGCAATTTATACGCTAGAAAGCCACTCCCCAACCAAAAGAACGCCTTCACTGCACAGGGCCGAACCGATCCGAACCAAAGCACAGGCATCTCAATCCATAACTGCACCATCACGGCTGCCCCAAACTGGGTGATGGATTTGAATGAGACGACGACGAACTATCTCGGGCGGCCATGGAAGCCGTTCTCAAGGACGGTGTATATGCAGTCTTACATTGGGGATTTGATCAGCCCAGTGGGGTGGCTGGAGTGGAATGGAACGGTGGGATTGGACACATTGTATTATGGGGAGTTTGAGAATTATGGACCAGGAGCTAACACGAGCTTGAGGGTCGATTGGGATGGCCATAGCTTGATGAATATCACAGAGGCTATGAATTTTACTGTCTATAACTTCACTATGGGAGATACCTGGCTGCCCTATACAGATATCCCCTTTTCTGGAGGTTTGCTATGA 1692 49.88 MNSAPFIFLFLLSLRLAGASDSPPPSAVLCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVRKCLKQAIKMSSVIGEYLDRGGDSRLNRQEVGALEDCRELSDSNVEFLQSIDGVLEAAEGVDEELMERIESILSAIVTNGQTCIDGLVESRSSLGNALSAPLLSAGELYSVSLGLVKNSLSRRWKKRSQKGDREGGNFPAAAQSREPLNTLIKGLHSMGSCNQSTKCSGRKRMLTDLGTTGILINNTVVVSSTGADNFTSIGDAISFAPNNSMPQDGYFVIYVRQGYYDEYVVVPKYKTNIMLIGDGINRTVITGNHNVVDGWTTYNSSTFTVYGDGFVAIDMTFRNTAGAEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQSTGISIHNCTITAAPNWVMDLNETTTNYLGRPWKPFSRTVYMQSYIGDLISPVGWLEWNGTVGLDTLYYGEFENYGPGANTSLRVDWDGHSLMNITEAMNFTVYNFTMGDTWLPYTDIPFSGGLL 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7415195 7418522 - CmaCh04G014580.1 Cma04g01458 292539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01458 563 Gene3D - 243 562 IPR012334 -
Cma04g01458 563 CDD PMEI-like_3 29 179 - -
Cma04g01458 563 SMART PMEI_2 20 176 IPR006501 GO:0004857
Cma04g01458 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Cma04g01458 563 SUPERFAMILY Pectin lyase-like 244 561 IPR011050 -
Cma04g01458 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 179 IPR035513 -
Cma04g01458 563 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Cma04g01458 563 PANTHER PECTINESTERASE 5 562 - -
Cma04g01458 563 Pfam Pectinesterase 249 548 IPR000070 GO:0030599|GO:0042545
Cma04g01458 563 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 47-RELATED 5 562 - -
Cma04g01458 563 Pfam Plant invertase/pectin methylesterase inhibitor 29 173 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01458 Cma18g00970 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01458 Cma-Chr4:7415195 Cma08g00442 Cma-Chr8:2494265 3.96E-180 dispersed
Cma14g00937 Cma-Chr14:4860848 Cma04g01458 Cma-Chr4:7415195 6.74E-06 dispersed
Cma18g00970 Cma-Chr18:8221292 Cma04g01458 Cma-Chr4:7415195 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01458 K01051 - csv:101206112 1006.51