Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01459 | ATGAGAATAATCTCTCCGCCTGTCTCTTCTTCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTGCATCGGCTCTGATTCCGGCATTCATAACAACAATCTCGCCGCTCCTCACCGGCCGCAATCTGAGAAAACCACAGCCAAACGGCGGAGGAGGAATCAAGATGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGATCCAACAACGCCTCTCCCGCTCGGCGGAGCTCCATTTACAGAGGAGTTACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTCTGGGACAAGAGTTCATGGAATAACATTCAGAACAAAAAGGGAAGGCAAGTTTATTTGGGAGCCTACGACAACGAGGAAGCCGCTGCTCGAACTTATGACCTTGCTGCCCTCAAATACTGGGGCCCCGGGACCACTCTCAATTTCCCGGTAGAGTCGTACACGAACCAAGTGGAAGAAATGCGGAAAGTTTCCAAGGAGGAATATTTGGCGTCCTTACGGCGGCAGAGCAGTGGTTTTTCCAGAGGCGTCTCCAAGTACCGCGGCGTTGCCCGGCACCACCACAACGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTTGGAAGCAAATATCTTTACTTGGGAACGTACAATACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCCATTGAGTACAGAGGAGCCAATGCAGTCACCAACTTTGACATTAGCAATTACATTGGGAGGTTACAGAATAAATCATCACCAGATCACCCCAATTGCTCCCCTGCTTCTTCTCAGGGAGAAGTAGTACAACAACAACAACAACAAGACGACGTGGATCAGCGGCAACAACATCAACAACAAATTGCATTCTCGGGCCCACCTGACCTCCAGTTTTCGATCGAGAATAACCCCGCTTTGGTTGTTATGGATGAACCACCAACACAAGACGATCATGATCTCCATTGGTCTTTCTTAGACACGGGATTATTCGTGCATGTCCCTGACCTCCCACTTGAGAAATCGAGCGAGTTAGCTGACTTATACTTTGACGAGATCAGGTTTGAGGACGATATTGGGTTGATGTTCGAAGCAAGCTTAGAAAACAATAAGAACTGCGAAGGTAATAACAACGATGATGATGATAATGTTGGGAAGAAGGAGGTCAACAACTGTAATGAGAAAATCAGATTGTTCGCAGCTACTACGACAACTTCACCGTCTTCTTCGTCGATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA | 1275 | 48.08 | MRIISPPVSSSSPSPSSSSSSSSSCIGSDSGIHNNNLAAPHRPQSEKTTAKRRRRNQDETKCQIHNHNANGSNNASPARRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNQVEEMRKVSKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLQNKSSPDHPNCSPASSQGEVVQQQQQQDDVDQRQQHQQQIAFSGPPDLQFSIENNPALVVMDEPPTQDDHDLHWSFLDTGLFVHVPDLPLEKSSELADLYFDEIRFEDDIGLMFEASLENNKNCEGNNNDDDDNVGKKEVNNCNEKIRLFAATTTTSPSSSSITTSVSCEFRV | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7419665 | 7423147 | - | CmaCh04G014590.1 | Cma04g01459 | 292540 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01459 | 424 | CDD | AP2 | 82 | 150 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | Gene3D | AP2/ERF domain | 184 | 245 | IPR036955 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | Gene3D | AP2/ERF domain | 83 | 151 | IPR036955 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 25 | - | - | |
Cma04g01459 | 424 | PRINTS | Ethylene responsive element binding protein signature | 84 | 95 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | PRINTS | Ethylene responsive element binding protein signature | 225 | 245 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | SMART | rav1_2 | 185 | 249 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | SMART | rav1_2 | 83 | 155 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | Pfam | AP2 domain | 83 | 141 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | Pfam | AP2 domain | 184 | 235 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Cma04g01459 | 424 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cma04g01459 | 424 | ProSiteProfiles | AP2/ERF domain profile. | 83 | 149 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | SUPERFAMILY | DNA-binding domain | 184 | 245 | IPR016177 | GO:0003677 | |
Cma04g01459 | 424 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 9 | 406 | - | - | |
Cma04g01459 | 424 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 | 9 | 406 | - | - | |
Cma04g01459 | 424 | MobiDBLite | consensus disorder prediction | 251 | 289 | - | - | |
Cma04g01459 | 424 | ProSiteProfiles | AP2/ERF domain profile. | 185 | 243 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | CDD | AP2 | 184 | 245 | IPR001471 | GO:0003700|GO:0006355 | |
Cma04g01459 | 424 | SUPERFAMILY | DNA-binding domain | 82 | 151 | IPR016177 | GO:0003677 | |
Cma04g01459 | 424 | MobiDBLite | consensus disorder prediction | 63 | 80 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g01459 | Cma18g00971 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01459 | Cma-Chr4:7419665 | Cma14g00603 | Cma-Chr14:3000914 | 7.67E-98 | dispersed | |
Cma06g00898 | Cma-Chr6:5727459 | Cma04g01459 | Cma-Chr4:7419665 | 9.72E-59 | dispersed | |
Cma18g00971 | Cma-Chr18:8227470 | Cma04g01459 | Cma-Chr4:7419665 | 5.82E-169 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34870 | PF00847 | AP2 | 8.30E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01459 | - | - | csv:101206349 | 611.298 |