Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01459 ATGAGAATAATCTCTCCGCCTGTCTCTTCTTCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTGCATCGGCTCTGATTCCGGCATTCATAACAACAATCTCGCCGCTCCTCACCGGCCGCAATCTGAGAAAACCACAGCCAAACGGCGGAGGAGGAATCAAGATGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGATCCAACAACGCCTCTCCCGCTCGGCGGAGCTCCATTTACAGAGGAGTTACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTCTGGGACAAGAGTTCATGGAATAACATTCAGAACAAAAAGGGAAGGCAAGTTTATTTGGGAGCCTACGACAACGAGGAAGCCGCTGCTCGAACTTATGACCTTGCTGCCCTCAAATACTGGGGCCCCGGGACCACTCTCAATTTCCCGGTAGAGTCGTACACGAACCAAGTGGAAGAAATGCGGAAAGTTTCCAAGGAGGAATATTTGGCGTCCTTACGGCGGCAGAGCAGTGGTTTTTCCAGAGGCGTCTCCAAGTACCGCGGCGTTGCCCGGCACCACCACAACGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTTGGAAGCAAATATCTTTACTTGGGAACGTACAATACACAAGAAGAAGCAGCTGCAGCATATGACATGGCTGCCATTGAGTACAGAGGAGCCAATGCAGTCACCAACTTTGACATTAGCAATTACATTGGGAGGTTACAGAATAAATCATCACCAGATCACCCCAATTGCTCCCCTGCTTCTTCTCAGGGAGAAGTAGTACAACAACAACAACAACAAGACGACGTGGATCAGCGGCAACAACATCAACAACAAATTGCATTCTCGGGCCCACCTGACCTCCAGTTTTCGATCGAGAATAACCCCGCTTTGGTTGTTATGGATGAACCACCAACACAAGACGATCATGATCTCCATTGGTCTTTCTTAGACACGGGATTATTCGTGCATGTCCCTGACCTCCCACTTGAGAAATCGAGCGAGTTAGCTGACTTATACTTTGACGAGATCAGGTTTGAGGACGATATTGGGTTGATGTTCGAAGCAAGCTTAGAAAACAATAAGAACTGCGAAGGTAATAACAACGATGATGATGATAATGTTGGGAAGAAGGAGGTCAACAACTGTAATGAGAAAATCAGATTGTTCGCAGCTACTACGACAACTTCACCGTCTTCTTCGTCGATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1275 48.08 MRIISPPVSSSSPSPSSSSSSSSSCIGSDSGIHNNNLAAPHRPQSEKTTAKRRRRNQDETKCQIHNHNANGSNNASPARRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNQVEEMRKVSKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLQNKSSPDHPNCSPASSQGEVVQQQQQQDDVDQRQQHQQQIAFSGPPDLQFSIENNPALVVMDEPPTQDDHDLHWSFLDTGLFVHVPDLPLEKSSELADLYFDEIRFEDDIGLMFEASLENNKNCEGNNNDDDDNVGKKEVNNCNEKIRLFAATTTTSPSSSSITTSVSCEFRV 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7419665 7423147 - CmaCh04G014590.1 Cma04g01459 292540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01459 424 CDD AP2 82 150 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 Gene3D AP2/ERF domain 184 245 IPR036955 GO:0003700|GO:0006355
Cma04g01459 424 Gene3D AP2/ERF domain 83 151 IPR036955 GO:0003700|GO:0006355
Cma04g01459 424 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Cma04g01459 424 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 PRINTS Ethylene responsive element binding protein signature 225 245 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 SMART rav1_2 185 249 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 SMART rav1_2 83 155 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 Pfam AP2 domain 83 141 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 Pfam AP2 domain 184 235 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 MobiDBLite consensus disorder prediction 1 80 - -
Cma04g01459 424 MobiDBLite consensus disorder prediction 1 43 - -
Cma04g01459 424 ProSiteProfiles AP2/ERF domain profile. 83 149 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 SUPERFAMILY DNA-binding domain 184 245 IPR016177 GO:0003677
Cma04g01459 424 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 406 - -
Cma04g01459 424 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 9 406 - -
Cma04g01459 424 MobiDBLite consensus disorder prediction 251 289 - -
Cma04g01459 424 ProSiteProfiles AP2/ERF domain profile. 185 243 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 CDD AP2 184 245 IPR001471 GO:0003700|GO:0006355
Cma04g01459 424 SUPERFAMILY DNA-binding domain 82 151 IPR016177 GO:0003677
Cma04g01459 424 MobiDBLite consensus disorder prediction 63 80 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01459 Cma18g00971 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01459 Cma-Chr4:7419665 Cma14g00603 Cma-Chr14:3000914 7.67E-98 dispersed
Cma06g00898 Cma-Chr6:5727459 Cma04g01459 Cma-Chr4:7419665 9.72E-59 dispersed
Cma18g00971 Cma-Chr18:8227470 Cma04g01459 Cma-Chr4:7419665 5.82E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34870 PF00847 AP2 8.30E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01459 - - csv:101206349 611.298