Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01489 ATGGCTAAGTTCCCTTCCATTCCCCTGTTTCTTCTCCTCTGCAACATCTGTCTTTCCATGGCGTCTTCGAACGATGACCGCATTTCTCTTTTGTCTTTCAAACAGTCCATTTCTGAAGACCCATACGCCTCTCTCAGCAACTGGAATTCTTCTGATGAAACCCCATGTGGTTGGAATGGTGTTACATGCAAGGATCTAAGAGTTGTTTCTCTCAGCATTCCCAACAAGAAACTCAGCGGTGTTCTTCCTTCTTCTCTGGGGTTTCTGTCCGAGCTTCGTCATGTGAATCTGAGGAGTAATAACCTCCATGGAGCCTTGCCATTACAGCTTTTCGAAGCTAATGGAATCCAAAGTTTGGTGCTTTATGGTAATTCCTTATCTGGGTCTGTGCCAAATGAGATTGGTAACCTCAAAAACCTTCAAATCTTGGATTTATCTCACAATTTCTTTAATGGGTCGTTGCCTGTTTCCTTAATGCAATGCAGAAGATTGAGAATTCTTGATCTTACTCACAACAATCTTACCAATTCTCTGCCTAATGGGTTTGGTTCCAGTTTGAATTTCTTGGAAAACTTGGATCTTTCTCACAATAACTTCAATGGTTCAATTCCAGTGGATATTGGTAATCTGTCTAGCTTGCAAGGCACTGTTGATTTCTCTCATAATCGCTTCTCCGGCTCTATCCCACCCACCCTGGGAAACCTTCCTGAAAAGGTTTATATTGATCTTACTTATAATAATCTGAGTGGTTCAATCCCCCAAAATGGTGCTCTTATGAACAGAGGACCAACAGCTTTCATTGGGAATCCTGGCCTTTGTGGTCCGCCATTGAAGAATCCATGTTCTTCTGAAGCTCCGGCTGCAAGTTTATCTTCACCAGACAATGGTAATAAGTATGGGAAAGGAGGGGTGAGTAAGAGCAGTTTGGTTGCAATAATCATAGGTGATATCATTGGTATTTGCCTGATTGGTGTTATGTTATCTTATTGCTATTTGAGGTTTTGGATTCATAGAAATGGGAAGAAGGCAGACCAATCTAAGTATGGTTTAGAGAAGGATGAGAAAGGAAGAAAGCATTGTCTGTGCTTTCAAAAGGGTGAGTCCGAGAACGTTTCGGAGAATATCGAGCAGTTTGATTTGGTACCTCTGGATTCACGAGTCACATTTGATCTCGACGAACTTCTCAAGGCATCGGCTTTCGTTTTGGGAAAAAGCGGTATCGGTATAGTGTATAAAGTTGTTCTTGAAGATGGACTCACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCTCAAAGATTCAAAGAGTTTCAAACTGAAGTTGAAGCAATTGGGAAGTTGAGGCATCCAAATCTTGTTAGTCTCAGAGCATATTATTGGTCTGTTGATGAAAAACTGCTTATTTATGATTACATACCAAATGGGAACCTTGCATCTGCCATTCATGGGAAGCCCGGGACGACACCGTTTACACCGCTACCATGGTCTGCTCGGTTAAGAATCATGAAAGGCATTGCGAAAGGGTTGGTTTACTTGCACGAGTTCAGCCCCAAAAAGTATGTTCATGGTAATTTGAGAACCAACAACATACTTCTTGGACACGACATGATACCACATATTTCGAATTTCGGGCTTGCCCGCCTTGTTAACATTGCTGGAGGTACTCCGACCGTGCAATCGAGTCATATGGCAGAAGAAAGACAACTAAAGTTTGCCACTTCTGAAGCTAGTACATTCAGTTCTAGTATGATTACTTACTACCAAGCTCCCGAATCGTTCAAAGTCGTGAAGCCATCGCAGAAATGGGACGTGTACTCGTATGGTGTGATATTACTCGAAATGATCACAGGAAGGTTGCCTATAGTTCAGGTGGAAGCCTCGGAAATGGATCTTGTTCAATGGATTCAACTCTGTATTGAGGAAAAGAAGCCGCTTTCGGACGTGATAGACCCGTGTTTGACTCCAGACGACGATGGGGATGAGGAGATCATCGAGGTTTTGAAGATGGCATTAGGTTGTGTTCAAAATAGTCCAGAAAGAAGACCGACAATGAGACATGTTTGTGATGGTTTGAGCAGGTTGGGTGTCAATCCAAACTAA 2100 42.57 MAKFPSIPLFLLLCNICLSMASSNDDRISLLSFKQSISEDPYASLSNWNSSDETPCGWNGVTCKDLRVVSLSIPNKKLSGVLPSSLGFLSELRHVNLRSNNLHGALPLQLFEANGIQSLVLYGNSLSGSVPNEIGNLKNLQILDLSHNFFNGSLPVSLMQCRRLRILDLTHNNLTNSLPNGFGSSLNFLENLDLSHNNFNGSIPVDIGNLSSLQGTVDFSHNRFSGSIPPTLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSEAPAASLSSPDNGNKYGKGGVSKSSLVAIIIGDIIGICLIGVMLSYCYLRFWIHRNGKKADQSKYGLEKDEKGRKHCLCFQKGESENVSENIEQFDLVPLDSRVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNLVSLRAYYWSVDEKLLIYDYIPNGNLASAIHGKPGTTPFTPLPWSARLRIMKGIAKGLVYLHEFSPKKYVHGNLRTNNILLGHDMIPHISNFGLARLVNIAGGTPTVQSSHMAEERQLKFATSEASTFSSSMITYYQAPESFKVVKPSQKWDVYSYGVILLEMITGRLPIVQVEASEMDLVQWIQLCIEEKKPLSDVIDPCLTPDDDGDEEIIEVLKMALGCVQNSPERRPTMRHVCDGLSRLGVNPN 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7578697 7581091 - CmaCh04G014890.1 Cma04g01489 292570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01489 699 Gene3D Ribonuclease Inhibitor 181 283 IPR032675 -
Cma04g01489 699 SUPERFAMILY L domain-like 23 278 - -
Cma04g01489 699 Pfam Protein tyrosine and serine/threonine kinase 402 689 IPR001245 GO:0004672|GO:0006468
Cma04g01489 699 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cma04g01489 699 ProSiteProfiles Protein kinase domain profile. 396 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01489 699 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 9 696 - -
Cma04g01489 699 Gene3D Ribonuclease Inhibitor 22 180 IPR032675 -
Cma04g01489 699 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 696 - -
Cma04g01489 699 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Cma04g01489 699 SUPERFAMILY Protein kinase-like (PK-like) 401 689 IPR011009 -
Cma04g01489 699 Gene3D Phosphorylase Kinase; domain 1 364 471 - -
Cma04g01489 699 CDD STKc_IRAK 402 694 - -
Cma04g01489 699 Gene3D Transferase(Phosphotransferase) domain 1 472 697 - -
Cma04g01489 699 SMART LRR_typ_2 89 113 IPR003591 -
Cma04g01489 699 SMART LRR_typ_2 186 210 IPR003591 -
Cma04g01489 699 SMART LRR_typ_2 137 161 IPR003591 -
Cma04g01489 699 SMART LRR_typ_2 162 184 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01489 Cma-Chr4:7578697 Cma15g00060 Cma-Chr15:305392 0 dispersed
Cma18g00997 Cma-Chr18:8398722 Cma04g01489 Cma-Chr4:7578697 0 wgd
Cma04g01489 Cma-Chr4:7578697 Cma04g02078 Cma-Chr4:14146147 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68506 PF00069 Pkinase 1.50E-27 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01489 - - csv:101215811 1176.0