Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01495 ATGGCTTCCAGAGAAGGGCAGCGGCGGCGTCAACATAATCACAATCTGGTGCCTCTTGCTGCTTTGATCAGTCAAGAGGCGAGGAGCGAGAGGTTGGAGAAACCGAGTTTAAGATATGGGAATGCAGCGCAGTCTAGAAAAGGGGAAGATTATTTTCTCATGAAAACTGATTGTCAGCGACTTCCTGGGAATCCTTCATCCACTTTCTCTGTTTTTGCTATATTTGACGGACACAATGGAAATGCTGCAGCAATTTTCACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCGTTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGTAGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTGATCATCGATGGATGGACGGTGACAGTAGCGTCGGTTGGAGATTCCCGGTGTATTTTAGATACTCAGGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGGCTGGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGTGGTGGGGAAATTGGAAGATTAAGCATTGTTGGTGGTGCTGAGATCGGCCCGCTCCGTTGTTGGCCGGGAGGCTTATGCCTTTCTCGATCCATTGGAGACATGGATGTCGGGGAGTTCATAGTTCCAATTCCCTTCGTGAAACAAGTAAAGTTATCAAACGCTGGTGGGAGGCTAATAATTGCTTCTGATGGCATCTGGGATGCCCTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCAGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTGAGAACAAGAGGCTTGAAAGATGATACAACGTGTATAGTTGTAGACATAGTTCCTCCAGATAATTCATTACAGTCTTCCTCTCCCCAGAAGAAACAAAGCGTACTCAAATCGCTGTTATTCAGGAAAAAGTCACACAGTTCTAACAAGCTATCCAAGAGCCTGTCAGCAGTTGGTTTCGTTGAAGAATTATTCGAAGACGGCTCCGCCATGCTTGCTGAAAGGCTGGGAACTGTAGAGTTGAGTGGATCTAAACATGGCACACCCGGCCTGTTCTCTTGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAAGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCCTTCCTTTGCGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAGCGTCCCAGCGGGGTGAGAGTGGCATAG 1299 48.65 MASREGQRRRQHNHNLVPLAALISQEARSERLEKPSLRYGNAAQSRKGEDYFLMKTDCQRLPGNPSSTFSVFAIFDGHNGNAAAIFTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIVPPDNSLQSSSPQKKQSVLKSLLFRKKSHSSNKLSKSLSAVGFVEELFEDGSAMLAERLGTVELSGSKHGTPGLFSCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7596201 7600260 + CmaCh04G014950.1 Cma04g01495 292576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01495 432 PANTHER PROTEIN PHOSPHATASE 2C 15-RELATED 7 432 - -
Cma04g01495 432 ProSiteProfiles PPM-type phosphatase domain profile. 31 300 IPR001932 -
Cma04g01495 432 CDD PP2Cc 47 300 IPR001932 -
Cma04g01495 432 Pfam Protein phosphatase 2C 64 285 IPR001932 -
Cma04g01495 432 Gene3D - 39 307 IPR036457 -
Cma04g01495 432 SUPERFAMILY PP2C-like 44 300 IPR036457 -
Cma04g01495 432 SMART PP2C_SIG_2 54 300 IPR001932 -
Cma04g01495 432 SMART PP2C_4 28 298 IPR001932 -
Cma04g01495 432 PANTHER ALPHABET, ISOFORM E-RELATED 7 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01495 Cma-Chr4:7596201 Cma11g01247 Cma-Chr11:8283532 0 dispersed
Cma18g01003 Cma-Chr18:8424972 Cma04g01495 Cma-Chr4:7596201 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01495 - - csv:101216777 780.785