Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01496 ATGGCGGCGTCCACTCGGCTGTCGTATTTGGCTCTCTATATTTGCTTACTCCACTTTACATGTCTTTATGCGTCTTCGAATGTAGATTTAGACGCTCTAATGGAGTTCAAAGCGGCGTCTGATAAGGGGAATAAGCTCACCACATGGAACTCTACCTCTAATCCATGTGCTTGGGACGGAGTTTCTTGCCTCAGAAACAGGGTCTCGAGGTTGGTTCTTGAGAATCTTGATCTTACAGGCTCTATGGCTCCTCTTACTGCTTTGACTCAGTTACGAGTGCTGAGCCTTAAGCGGAACCGTCTCTCCGGTCCCATTCCCGACCTCTCCAACTTCACTGCTCTCAAACTCGTGTTTCTATCGTACAATGAATTTTCCGGTGACTTCCCGGCTTCTTTTCGGTCTCTCGTCCGGCTCTACCGTCTCGATCTTTCTCACAATAACCTGACTGGAGAGATACCGGCTTCTGTTAACCGTATGACTCATCTTCTCACTCTCCGTCTCGAAGATAACCGGTTTTCAGGTTCTATTTTGGAACTGAACCTGCCGAATCTTCAGGACTTCAATATTTCAGCGAACAGTTTCTCCGGCGAAATCCCCAAATCGTTGTCGACGTTTCCTGAGTCTGCTTTCGGCCAGAACTTGGGTTTGTGTGGTTCCCCTCTTCAGAGCTGTAAGAGCATTGTCAGTAATCCGACGGAACCCGGATCCGAAGGGGCAATTGCCTCGCCCATTACACGGCCGCGGAACCTCACTGTTTCATCTACTCCGACTTCCCTTCCCGGAGTTACACCTGAAACAAAGCCGGAAAGTACACACCACCACAGCACTGGAAAGATAGGTTCTCTAGCACTAATCGCCATAATTCTCGGCGACGTTTTGGTGCTAGCAGTGGTCTCGCTTCTTCTCTATTGTTATTTCTGGAAAAACTCTGCTGGCAAATCCCGAGACAGGAAGGGATCGTCGAAGCTTCTGGAGAGCGAGAAGATTGTTTACTCTTCTAGTCCATTTCCAGTCCAAGCCGGAACAGAAAGAGGCCGGATGGTGTTCTTCGAGGGAGTCAAGAAGTTCGAGCTCGAAGATTTGCTTCGAGCCTCCGCGGAAATGCTCGGAAAGGGTGGGTTCGGAACTTCGTACAAGGCGATTCTCGACGACGGCAATGTGGTGGCGGTGAAACGGCTGAAAGATGCTCAGGTTGGAGGGAAACGAGAGTTCGAGCAGCAGATGGAGGTATTGGGAAGGTTGAGACATGCTAATATTGTAAGCTTGAGAGCTTACTATTTTGCAAGAGAGGAGAAGTTATTGGTATATGATTACATGCCCAATGGCAGCTTCTTCTGGCTTCTTCACGGGAACAGAGGTCCTGGACGGACGCCGTTGGACTGGACGACGAGGTTGAAGATCGCCGCCGGAGCGGCTAGAGGACTGTCCTTCATTCACAACTCCTGCAAGTCCCTCAGGCTCGCCCATGGCAATGTTAAATCCACCAACATCCTTTTAGACCAATCTGGAAATGCTCGCGTCTCTGATTTCGGATTGGCCCTTTTCACTCCCCCTTCCACTCCTCGATCCAATGGTTACCGGGCGCCGGAGTGCGGTGAGGGTAGAAAACTGACTCAGAAGGCGGATGTGTACTCGTTTGGGGTTCTTCTCCTCGAGCTGCTTACTGGAAAGTGCCCTTCCGTCATGGAGAACGGCGGTGGATACGGCGGCGTGTTGGATTTGCCCCGGTGGGTTCAATCGGTGGTGCGAGAGGAGTGGACGGCTGAAGTGTTTGATTTGGAGCTGATGAGATACAAAGACATCGAAGAGGAAATGGTGGGGCTTCTGCAGATCGCCTTGGCCTGTACATCGGCTTCGCCGGATCAACGGCCGAAGATGAGCCATGTGGTGAAGATGATTGAGGAACTCCGAGGGATGGAGGTGTCGCCGTTCCATGACGGATCTGACTCGGTTACGGAGTCGCCGTCAGTTTCGGAGGGTACTTGCGGCGTAGGAGCCAGCCAGTAA 2007 51.47 MAASTRLSYLALYICLLHFTCLYASSNVDLDALMEFKAASDKGNKLTTWNSTSNPCAWDGVSCLRNRVSRLVLENLDLTGSMAPLTALTQLRVLSLKRNRLSGPIPDLSNFTALKLVFLSYNEFSGDFPASFRSLVRLYRLDLSHNNLTGEIPASVNRMTHLLTLRLEDNRFSGSILELNLPNLQDFNISANSFSGEIPKSLSTFPESAFGQNLGLCGSPLQSCKSIVSNPTEPGSEGAIASPITRPRNLTVSSTPTSLPGVTPETKPESTHHHSTGKIGSLALIAIILGDVLVLAVVSLLLYCYFWKNSAGKSRDRKGSSKLLESEKIVYSSSPFPVQAGTERGRMVFFEGVKKFELEDLLRASAEMLGKGGFGTSYKAILDDGNVVAVKRLKDAQVGGKREFEQQMEVLGRLRHANIVSLRAYYFAREEKLLVYDYMPNGSFFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLSFIHNSCKSLRLAHGNVKSTNILLDQSGNARVSDFGLALFTPPSTPRSNGYRAPECGEGRKLTQKADVYSFGVLLLELLTGKCPSVMENGGGYGGVLDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIALACTSASPDQRPKMSHVVKMIEELRGMEVSPFHDGSDSVTESPSVSEGTCGVGASQ 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7601930 7604572 + CmaCh04G014960.1 Cma04g01496 292577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01496 668 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 651 - -
Cma04g01496 668 Gene3D Transferase(Phosphotransferase) domain 1 439 650 - -
Cma04g01496 668 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Cma04g01496 668 Gene3D Phosphorylase Kinase; domain 1 338 438 - -
Cma04g01496 668 Pfam Leucine rich repeat 113 172 IPR001611 GO:0005515
Cma04g01496 668 Pfam Protein kinase domain 366 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01496 668 SUPERFAMILY L domain-like 44 205 - -
Cma04g01496 668 MobiDBLite consensus disorder prediction 642 668 - -
Cma04g01496 668 MobiDBLite consensus disorder prediction 232 275 - -
Cma04g01496 668 Gene3D Ribonuclease Inhibitor 86 230 IPR032675 -
Cma04g01496 668 Gene3D Ribonuclease Inhibitor 22 85 IPR032675 -
Cma04g01496 668 MobiDBLite consensus disorder prediction 647 668 - -
Cma04g01496 668 MobiDBLite consensus disorder prediction 246 265 - -
Cma04g01496 668 PANTHER - 24 651 - -
Cma04g01496 668 SUPERFAMILY Protein kinase-like (PK-like) 367 633 IPR011009 -
Cma04g01496 668 ProSiteProfiles Protein kinase domain profile. 363 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01496 668 CDD STKc_IRAK 369 636 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00390 Cma-Chr4:1971034 Cma04g01496 Cma-Chr4:7601930 3.29E-109 dispersed
Cma04g01496 Cma-Chr4:7601930 Cma11g00586 Cma-Chr11:2810031 9.95E-174 dispersed
Cma14g01180 Cma-Chr14:9442176 Cma04g01496 Cma-Chr4:7601930 1.54E-107 dispersed
Cma18g01004 Cma-Chr18:8432568 Cma04g01496 Cma-Chr4:7601930 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68507 PF00069 Pkinase 1.70E-34 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01496 - - csv:101217010 1187.94