Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01497 ATGTTAGTTACGCTTACGGCCATTCATAACAGCCACGCTGGTGGAGCCGTCGCCGCTATGGCTGATACTTCTCCGGTGAATTCCTCAATGGAATCATGTTCCAGAATTGTCGCTGCGGAATCTCCGATTCTCATATTTGTCTTCTTTCACAAGGCTATACGTGCTGAGCTTGATCACTTCCATCGCGACGCTATTGAATTCGCTACCAACCAGCAAAGTGGTGGCGATATTGGACCGTTGTTGCAGCGCTATCACTTCCTTCGAGCTGTTTATAAGCATCACTGTAACGCCGAGGACGAGGTCATCTTCCCGGCTCTAGATCTGCGAGTGAAAAATGTGGCAAGTACTTATTTCCTTGAACATGAAGGGGAGAGTGTTCTGTTTTGCCAATTGCTGGAGCTTCTGAATTCTAATGCGTTGGAGGAAGGGGGCTATAAGAGGGAGCTGTCATCTTGTGTCCGAGCTCTTCAGATATCAATATGCCAGCATATGTTCAAGGAAGAGGAACAGGTGTTCCCGTTACTTACAGAGAAGTTTTCTTTTGAAGAACAGGCATCATTAGTTTGGGAATTTCTTTGTAGTATACCTATTCATATGCTGGAAGTCTTTCTTCCGTGGCTCTCTTCCTCTATTTCTCCAGATGAGCTTCAGATTATGTGCAAATGCTTGAGCAAAATTATCCCAGAGCAAAAGCTTCTTCAGAAGATAATATTTTCCTGGATGGAGGATGCAAGAACGACTCGTGCCAATCAAAGTTTGTATGACGAAAATCTGGACTTTCAATGTCTAGGTTCTCAGGTTCATGATCTTATATGTAGACCAGACCCCACTTCTGAATCAGCTAGAATTGGTAAAAGGAAATACATGGAGCAAAGTAATTTTACCTATTCTACTGTTTCAATTGCTTGCCCCATCAATGAAATATTATATTGGCATAATGCTATAAAAAAAGAACTAAATAGCATAGCTGAGGCAGCTAGGGACCTACCATTGTCTTCTGATTTTTCTGAGTTGTCTGCACTAAAGGAGAGGCTGCAGTTTATTGCAGAAGTCTGCATCTTCCACTGCATTGCTGAGGATAAAGTTATATTTCCTGCTGTAGATGCTGAATTATCTTTTGCTGATAAGCATGCAGAAGAAGAAATTCAATTTGATAAACTTAGGCACTTGATAGAGAGTATCCAAGCTGATAGAGCTAAATATTCTTTTGCTGAAATTCATAAAAAGTTAAGTTCTCATGCTGATCAAATTATCAAGACCATCCAGAAGCACTTCCATGATGAGGAGTTGCATGTTCTTCCACTTGCTCGGAAGTATTTTGGACCCCAGAGGCAGCGAGAACTTCTGTATCACAGCTTATGCATAATGCCCTTGAAATGGATAGAGCGTGTCTTACCTTGGTTGGTAGAAACACTTACTGAAGAAGAAGCAAGATCCTTTCTTCAGAATATGCAAATGGCAGCTCCAAAGTCGGATCATGCACTTGTTACACTATTTTCTGGTTGGGCATGCAAAGGTCATCCCAGGAGCCTTTGTTTTTCTGCAAGTGATCTTAGCCATTGTGCTGAACGGATATCGACGGGAGATGAAGAATCATGCTCCTCCTTTTCTTCTGCCAATGAAAAACCTTCTTGCATTCAGGCAACTGAGTGTGCCAGGCCATCCAAATGTGAGAAGGAAGTATGCCATGGGGACTTAAATGGCCGTCTTCCTTTGAAAAGCCCAAGCAAAAAACGTCAGTTCACTCGTGCGAAAAAATCTGCTTGTGTCCCTGGGTTAGGAGTGGATGACAATAATTTAGGAATGAGATCTCTGGCAGCAGCAAAATCATTGCGTTCTTTGTGTTTTGGTCCCTATGCTCCTCCTCTCAACTCCAGTCTTTTCAGTCTTGAAAATGATCCAATCTCCTGTGGCAATGGTTCCAAGTCACGACCTATTGATAACATATTTAAATTTCATAAAGCAATAAGCAAAGACTTGGAGTTTTTGGATAATGAATCTGTGAATCTCGGTGATTGCAATGATACATTCTTTAGGAAATTTTGCGGTAGGTTTCATCTGTTGTGGGGTTTATATAAAGCTCATAGTAATGCAGAGGACGATATAGTATTTCCTGCATTAGAATCAAAAGAAACTCTTCATAATGTGAGTCACTCTTATACGTTAGACCACAAACAGGAGGAAGAGCTATTTGAAGGTATTTCTACTGCACTTTCTAAGCTTACAAACGTTCGCAGAGACTTGAATGGTAAGAAAAACTGTAACGATTCAAATTGGATCATGTCTCATACCTCTGATATTAATGATACTGTGAGAATGAATATTGAGCTGGCAACAAAGCTCCAGGGCATGTGTAGATCAATCAGAGTGACACTTGACCAACATATTTTCCGTGAGGAATCGGAGTTGTTACCGTTGTTCCATACATATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTAGAATAATTGGTACTACAGGTGCTGAGGTCCTTCAATCAATGTTGCCTTGGGTAACTTCTGCACTTACTCAGGAGGAGCAGAATAAGATGATGGATACACTGAAGCAGGCAACCAGAAATACAATGTTTAGTGACTGGCTAAATGAATGGTGGGAAGGCCCTACTACATCTCCACATTATATGGAATCTGTCAGTCATGTATCTGGAGGTTCTGATTCCCATGGCAACTGTGACCATAAAAATGATTCGGTTTTCAAGCCTGGATGGAAAGAGATTTTTAGGATGAATGAAAATGAACTTGAATCAGAAATAAGAAACGTTGCCCGGGATTCAACCATTGACCCTAGGAGAAAAGATTATCTGATTCAGAACTTGATCACCAGTCGCTGGATAGCTTCTCAGCAGATGCTACCCCAAGCCACTGCAGGTGAAAACTCAGATGCAAAAGAACTGATTGCATGTGCCCCATCATTTCGTGATCCCGAGAAACAGATTTTCGGGTGTGAGCATTATAAAAGAAACTGTAAGCTTCTTGCAACTTGTTGTGGCAAGTTGTTCACTTGTAGTTTCTGTCATGATAAAGTCAGTGATCATTCGATGGACAGGAAGGCTTCAACTGAAATGATGTGTATGCGCTGCCTCAAAGTTCAGCCTACTGCATCTGTTTGCTCAACACCAGCCTGTGGTGGTCTCTCTATGGCAAAGTTCTACTGTAGTATTTGCAAACTTTTTGACGATGAAAGGGAAGTCTATCATTGTCCCTTCTGCAATTTATGTCGTCTTGGGAAGGGACTTGGTACTGATTTTTTTCATTGTATGACATGCAACTGTTGTTTGGCAATGAAATTAGTTGATCACAAGTGCCATGAGAGGGGCCTAGAAACAAACTGCCCTATTTGCTGTGATTTTTTGTTCACGTCTAGTGAAAGTGTTAGAGCTCTCCCTTGTGGCCATTTCATGCATTCAGCTTGTTTCCAGGCTTACACTTGTAGCCACTACATATGTCCAATATGTAGCAAGTCCTTGGGAGATATGACGGTATACTTCGGCATGCTTGACGCATTACTGGCATTGGAGGTACTCCCTGAAGAATACATGGAACGCTGTCAGGACATATTGTGCAATGACTGCTCCAAGAAGGGGAAAGCGCGCTTCCACTGGCTGTACCATAAATGTGGGAATTGTGGATCTTACAATACCAAGGTGATTAAGGTTAGTTCAAGCTCCGCACAGCAATGA 3702 41.79 MLVTLTAIHNSHAGGAVAAMADTSPVNSSMESCSRIVAAESPILIFVFFHKAIRAELDHFHRDAIEFATNQQSGGDIGPLLQRYHFLRAVYKHHCNAEDEVIFPALDLRVKNVASTYFLEHEGESVLFCQLLELLNSNALEEGGYKRELSSCVRALQISICQHMFKEEEQVFPLLTEKFSFEEQASLVWEFLCSIPIHMLEVFLPWLSSSISPDELQIMCKCLSKIIPEQKLLQKIIFSWMEDARTTRANQSLYDENLDFQCLGSQVHDLICRPDPTSESARIGKRKYMEQSNFTYSTVSIACPINEILYWHNAIKKELNSIAEAARDLPLSSDFSELSALKERLQFIAEVCIFHCIAEDKVIFPAVDAELSFADKHAEEEIQFDKLRHLIESIQADRAKYSFAEIHKKLSSHADQIIKTIQKHFHDEELHVLPLARKYFGPQRQRELLYHSLCIMPLKWIERVLPWLVETLTEEEARSFLQNMQMAAPKSDHALVTLFSGWACKGHPRSLCFSASDLSHCAERISTGDEESCSSFSSANEKPSCIQATECARPSKCEKEVCHGDLNGRLPLKSPSKKRQFTRAKKSACVPGLGVDDNNLGMRSLAAAKSLRSLCFGPYAPPLNSSLFSLENDPISCGNGSKSRPIDNIFKFHKAISKDLEFLDNESVNLGDCNDTFFRKFCGRFHLLWGLYKAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEELFEGISTALSKLTNVRRDLNGKKNCNDSNWIMSHTSDINDTVRMNIELATKLQGMCRSIRVTLDQHIFREESELLPLFHTYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTLKQATRNTMFSDWLNEWWEGPTTSPHYMESVSHVSGGSDSHGNCDHKNDSVFKPGWKEIFRMNENELESEIRNVARDSTIDPRRKDYLIQNLITSRWIASQQMLPQATAGENSDAKELIACAPSFRDPEKQIFGCEHYKRNCKLLATCCGKLFTCSFCHDKVSDHSMDRKASTEMMCMRCLKVQPTASVCSTPACGGLSMAKFYCSICKLFDDEREVYHCPFCNLCRLGKGLGTDFFHCMTCNCCLAMKLVDHKCHERGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMTVYFGMLDALLALEVLPEEYMERCQDILCNDCSKKGKARFHWLYHKCGNCGSYNTKVIKVSSSSAQQ 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7606180 7614229 + CmaCh04G014970.1 Cma04g01497 292578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01497 1233 ProSiteProfiles Zinc finger CTCHY-type profile. 1054 1117 IPR017921 -
Cma04g01497 1233 SUPERFAMILY CHY zinc finger-like 981 1045 IPR037274 GO:0008270
Cma04g01497 1233 SUPERFAMILY RING/U-box 1117 1164 - -
Cma04g01497 1233 Pfam Zinc-ribbon 1165 1221 IPR039512 -
Cma04g01497 1233 CDD RING-H2_Pirh2 1117 1160 - -
Cma04g01497 1233 CDD Hr-like 307 434 - -
Cma04g01497 1233 CDD Hr-like 45 173 - -
Cma04g01497 1233 Gene3D nmb1532 protein domain like 640 866 - -
Cma04g01497 1233 ProSiteProfiles Zinc finger RING-type profile. 1118 1160 IPR001841 -
Cma04g01497 1233 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 32 1230 - -
Cma04g01497 1233 SUPERFAMILY Zinc hairpin stack 1055 1110 IPR037275 -
Cma04g01497 1233 ProSiteProfiles Zinc finger CHY-type profile. 982 1051 IPR008913 GO:0008270
Cma04g01497 1233 Pfam Ring finger domain 1117 1159 IPR001841 -
Cma04g01497 1233 Gene3D nmb1532 protein domain like 307 451 - -
Cma04g01497 1233 Gene3D nmb1532 protein domain like 40 192 - -
Cma04g01497 1233 CDD Hr-like 649 805 - -
Cma04g01497 1233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1113 1162 IPR013083 -
Cma04g01497 1233 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 32 1230 - -
Cma04g01497 1233 Pfam CHY zinc finger 989 1064 IPR008913 GO:0008270
Cma04g01497 1233 Pfam Hemerythrin HHE cation binding domain 307 436 IPR012312 -
Cma04g01497 1233 Pfam Hemerythrin HHE cation binding domain 645 806 IPR012312 -
Cma04g01497 1233 Pfam Hemerythrin HHE cation binding domain 48 175 IPR012312 -
Cma04g01497 1233 Gene3D - 1189 1233 - -
Cma04g01497 1233 SMART ring_2 1118 1159 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01497 Cma-Chr4:7606180 Cma10g00172 Cma-Chr10:779481 4.14E-07 dispersed
Cma10g00305 Cma-Chr10:1377743 Cma04g01497 Cma-Chr4:7606180 0 wgd
Cma11g00284 Cma-Chr11:1408956 Cma04g01497 Cma-Chr4:7606180 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01497 K16276 - csv:101217252 2135.92