Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01521 ATGGACGGGATTTGCATTGACCAAACCACTTCCACAAATTCCCCCCCTCTCAAATCTCCACCGCCGGAGACTAGTCTCTGCCGCGTCGGGAGTGGCTTCACCAGTGTCGTTCTCGACTCCGACTCATGCGGCGTCGAGGCAGAGTCACGGAAACTGCCCTCCTCCCGTTTCAAAGGAGTGGTCCCACAGCCCAACGGCCGCTGGGGGGCACAGATTTACGAGAAGCACCAGAGAGTATGGTTGGGGACTTTCAACGAAGAGGAAGAAGCAGCACGTGCATACGATGTGGCCGCCCAACGCTTCCGCGGCCGTGACGCTGTCACCAATTTTAAAGAAGAAGAGGAGGAGGAGGACGACGACGACGACGACGACGACGTATCGGCCTTCCTCAACTCCCATTCCAAGGCAGAGATCGTGGACATGCTACGTAAGCACACCTACCTACACGAGCTCCATCAAAGCAAACGAAACGCCGGGTTATCCGGTTTAGATCGCAAACATAACCGTTCGTTGTCCGGGTCGGATTCTGACGCTCGCGAACTTCTATTCGAAAAAGCGGTGACCCCAAGCGATGTAGGAAAATTGAACCGTCTCGTCATCCCAAAACAACACGCCGAGAAAAACTTCCCTCTCCAAACCGGTTCCACCGCTTCCTCGAAAGGTCTATTGTTGAACTTCGAGGACGGAGGAGGCAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAAAGCTACGTGCTAACCAAAGGGTGGAGCCGGTTCGTGAAAGAAAAGAATCTGAAAGCCGGTGACATTGTGAGCTTCCTCAAATCTCCCGGACAGGACAAACAGCTTTACATCGAATGGAAGTCCAGAAAGGCGTCGCCCACAACCGACTCCAACATGAACCCAGTTCACATCGTCCGACTCTTCGGAGTTGACATCGTCAAAGCTTCTTCGCCAAACACTGGGTGCGGCGAGAAGAGGAGAGAATTGGAATTTCTCGCTTTTCAATATTCCTAA 1008 53.08 MDGICIDQTTSTNSPPLKSPPPETSLCRVGSGFTSVVLDSDSCGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDVAAQRFRGRDAVTNFKEEEEEEDDDDDDDDVSAFLNSHSKAEIVDMLRKHTYLHELHQSKRNAGLSGLDRKHNRSLSGSDSDARELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSPGQDKQLYIEWKSRKASPTTDSNMNPVHIVRLFGVDIVKASSPNTGCGEKRRELEFLAFQYS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7697947 7699327 + CmaCh04G015210.1 Cma04g01521 292602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01521 335 ProSiteProfiles B3 DNA-binding domain profile. 183 288 IPR003340 GO:0003677
Cma04g01521 335 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 10 331 IPR044800 GO:0003700
Cma04g01521 335 SUPERFAMILY DNA-binding domain 55 111 IPR016177 GO:0003677
Cma04g01521 335 Gene3D - 171 297 IPR015300 -
Cma04g01521 335 SUPERFAMILY DNA-binding pseudobarrel domain 181 286 IPR015300 -
Cma04g01521 335 SMART rav1_2 56 117 IPR001471 GO:0003700|GO:0006355
Cma04g01521 335 MobiDBLite consensus disorder prediction 107 126 - -
Cma04g01521 335 MobiDBLite consensus disorder prediction 1 24 - -
Cma04g01521 335 CDD B3_DNA 182 270 IPR003340 GO:0003677
Cma04g01521 335 CDD AP2 55 110 IPR001471 GO:0003700|GO:0006355
Cma04g01521 335 Pfam B3 DNA binding domain 183 287 IPR003340 GO:0003677
Cma04g01521 335 Pfam AP2 domain 56 103 IPR001471 GO:0003700|GO:0006355
Cma04g01521 335 ProSiteProfiles AP2/ERF domain profile. 56 111 IPR001471 GO:0003700|GO:0006355
Cma04g01521 335 SMART B3_2 183 288 IPR003340 GO:0003677
Cma04g01521 335 MobiDBLite consensus disorder prediction 111 126 - -
Cma04g01521 335 Gene3D AP2/ERF domain 55 112 IPR036955 GO:0003700|GO:0006355
Cma04g01521 335 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 10 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01521 Cma-Chr4:7697947 Cma15g00991 Cma-Chr15:5901090 2.05E-119 dispersed
Cma18g01042 Cma-Chr18:8666735 Cma04g01521 Cma-Chr4:7697947 1.47E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34876 PF02362 B3 1.20E-27 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01521 K09287 - csv:101203784 551.977