Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01537 ATGCGTGGGGAAGATCAGGAAGAGGAACATCATCAGCAACAACAGGAGTGTTCACAAACAATTGAGAATATGTTTCAACAACAGCTTCTTCTCCACCAACACCTACAAAACAACAACAACCACGACAACAACGGAGACCATCATCATGGAACTGGAAGAGGGTTAATTTTTCCACCCGAACTCGTGTCGCCGGTTCTCCAGCCGTGGTCGTCGCTTAACCCTTTTATGATCCCTCCCCCACCATCGTTACCATGTTCATCATCATCATCCTATGGTGGTTTGTTTAACCGGAGGCCACCTAATTGTCTTCAGTTTGCTTATGATGGTTCCTCTTCCACGGACCACCTAGGTCAGATCATATCCACCACGCTTGGACCCGTGGTTCATCCTGGTTCCATGGCTCCCTTTGGGCTACAAGCTGAGCTTGGCAAAATGAGTGCGCAAGAAATTATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGGAGAAGAGAAAGAATCAACAACCATCTCGCTAAGCTCAGGAGCTTACTCCCTAATACCACTAAAACGGACAAAGCTTCACTGCTAGCCGAAGTAATACAACACGTGAAAGAGCTAAAACGGCAGACATCATTGATAGCTGAAACAAGTCCAATCCCAACAGAAGTTGACGAGGTAACAGTGGACGATGCCTCAGAGGAGATGATGATAAGTGGAGCCAAATTTGTAATAAAGGCTTCCCTTTGCTGCGAGGACCGCTCTGATCTCCTCCCTGACCTCATCAAAGCCCTCAAATCCTTGCGTTTAAGAACCCTCAAAGCTGAAATCACAACGCTTGGTGGGCGTGTAAAAAATGTGTTGTTTATCACTGCTGAAGAAGAGCAACAACATGATCCCGAACAGCAACACAATATGAGCTCTATTCAAGAAGCACTCAAAGCTGTGATGGAAAGAACAGGAGGGGATGATTCTTCTTCAGCAAATATCAAAAGACTAAGGACCACAAATAACATCAATATCCTTTGA 1026 45.52 MRGEDQEEEHHQQQQECSQTIENMFQQQLLLHQHLQNNNNHDNNGDHHHGTGRGLIFPPELVSPVLQPWSSLNPFMIPPPPSLPCSSSSSYGGLFNRRPPNCLQFAYDGSSSTDHLGQIISTTLGPVVHPGSMAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPIPTEVDEVTVDDASEEMMISGAKFVIKASLCCEDRSDLLPDLIKALKSLRLRTLKAEITTLGGRVKNVLFITAEEEQQHDPEQQHNMSSIQEALKAVMERTGGDDSSSANIKRLRTTNNINIL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7789674 7792288 - CmaCh04G015370.1 Cma04g01537 292618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01537 341 Pfam Helix-loop-helix DNA-binding domain 160 206 IPR011598 GO:0046983
Cma04g01537 341 Gene3D - 152 213 IPR036638 GO:0046983
Cma04g01537 341 CDD bHLH_AtAIG1_like 152 229 - -
Cma04g01537 341 PANTHER TRANSCRIPTION FACTOR BHLH30 63 339 - -
Cma04g01537 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 212 IPR036638 GO:0046983
Cma04g01537 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Cma04g01537 341 MobiDBLite consensus disorder prediction 36 55 - -
Cma04g01537 341 SMART finulus 163 212 IPR011598 GO:0046983
Cma04g01537 341 PANTHER TRANSCRIPTION FACTOR BHLH30 63 339 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00838 Cma-Chr3:6304153 Cma04g01537 Cma-Chr4:7789674 1.57E-13 dispersed
Cma04g01537 Cma-Chr4:7789674 Cma04g02004 Cma-Chr4:12357179 1.86E-107 dispersed
Cma20g00220 Cma-Chr20:1050050 Cma04g01537 Cma-Chr4:7789674 3.50E-34 dispersed
Cma05g00548 Cma-Chr5:2680552 Cma04g01537 Cma-Chr4:7789674 3.72E-35 transposed
Cma18g01047 Cma-Chr18:8715387 Cma04g01537 Cma-Chr4:7789674 4.72E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34878 PF00010 HLH 2.30E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01537 - - csv:101214615 427.557