Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01553 ATGAGCAGCGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCTTGCGGGAAAGCTTCTTTAAAGGATGATCATTCACAACTTGGGGGACCTGGGTTCTCTCGTGTTGTTTTCTGTAATGAACCAAAGTGTTTTGAGGCAGAAATTCGTAGCTACATAGACAATTATGTTAGTACCACCAAGTATACTTTAGCTACTTTCCTTCCTAAGTCATTGTTTGAGCAATTCAGGAGAGTGGCCAATTTCTACTTTTTAGTCACTGGGATCCTTGCTTTTACTCCCCTTGCTCCTTACACCGCTGTCAGCGCCATCGTCCCTCTTATTCTCGTCATCTTGGCGACGATGATCAAAGAAGGGATCGAGGATTGGAGGCGCAAAAAACAGGATCTTGAGGTAAACAATAGAAAGGTAAAAGTGCACCATGGAGATGGAGTTTTTGGTTATACAGAGTGGAAGAATCTGATGGTTGGTGATATTGTGAAAGTAGAGAAGGACGGATTCTTTCCAGCTGATATTATCTTGCTTTCATCAAGTTATGAGGATGCAATCTGCTACGTCGAGACAATGAATCTCGACGGCGAGACAAATTTGAAACTAAAACAAGCGTTGGAGGTAACGTCGCATATGAACGAAGATTTTATCTTCAATAGCTTTAAGGCTATCCTAAAATGTGAGGACCCAAATGCAAATTTATACAGTTTTGTTGGTAGTTTAGAGCTGGAAGAACAACAATATCCTCTGTCTCCTCAACAGCTACTCCTTCGAGGCTCTAAGCTTCGGAATACGGATTATATATATGGGGTTGTTGTCTTTACGGGTCGTGACACGAAGGTTATTCAGAATTCTACTGATCCACCTTCAAAGAGAAGCAAAGTTGAGAAGAAAATGGATAAGATTATATATTTTTTGTTCTGTCTTCTGTTTTTGCTTGCTCTTGTAGGATCTATAGTTTTTGGCGTTGTGACTGAGGATGATTTGGAGAATGGGAGAATGAAACGATGGTATCTGAGGCCTGATGATGCTAGAGTTTTCTATGATCCAAAAAGGTCTCAAATGGCTGCAATTTTCCATTTTCTTACTGCACTGATGTTATATAACTACTTCATTCCAATATCACTGTATGTATCAATAGAAATTGTGAAAGTTCTTCAGAGCATGTTCATCAATCAAGATATTAATATGTATTATGAAGAAGCGAATAAACCCGCTCGTGCTCGCACCTCGAATTTGAATGAAGAACTCGGTCAAGTCGATACGATACTCACTGACAAGACGGGAACTTTGACATGTAATTCAATGGAGTTCATCAAGTGTTCTGTGGCAGGGAGGGCTTATGGTCAGGCAAATGGGGGGAAGCACCATGAGGATGTTAAGAATAAAGCTTCACATATCAAAGGTTTTAACTTTAAGGATGATAGGATTATGAATGGGAATTGGGTTAATGAGCCTCATGCCAATGTCATCGAAACTTTTCTCCGTGTTCTTGCGACTTGTCATACGGTGATACCCGAAATCAATGAGGACAATGGAGAGGTTTCTTACGAGGCCGAATCTCCAGACGAAGCAGCATTCGTGATTGCTGCTAGAGAACTCGGATTCGAGTTCTACAAAAGAACACAGACAAGTATATCACTGCATGAGTTTGATCCTTCATTAGGCAAGAAAGTTGATAGGACATATAAACTGCTGCATGTTTTGGAGTTCAACAGCTCAAGAAAGCGGATGTCTGTCATAGTAAGAAATGAAGAGGCCAAGACATTGTTATTCTGTAAAGGTGCAGACAGTGTTATGTTTGAAAGGCTTGGAAAGAATGGGAGGGTGTTTGAGGAGGAGACCAAGGAACATGTCAGTGAGTATGCTGATGCAGGATTGAGGACTTTGATACTCGCCTATCGCGAGCTCGACGACGAAGAATACAGAGAGTTTGATAGCAAGTTCACTATGGCGAAAAACTCGGTTAGTGCAGACCGAGAGTCGTTGATTAATCAAGTGACCGATAAAATCGAAAGAAATCTGATTCTTCTTGGTGCCACTGCTGTTGAAGACAAGCTTCAAAATGGGGTTCCTGAGTGCATTGATAGGCTTGCTCAAGCTGGAATAAAGATTTGGGTATTGACTGGGGACAAAATGGAGACTGCTATCAATATTGGATTACTGAGACAAGATATGAAGCAGATTGTAATTACTCTCGAGACGTCGGAAATTCAGGCGTTGGAGAAAACGGGGGATAAGGCTTCTGCATCAAGGCAAAGCGTCCTCGATCAAATTACTCGAGGGAGAGCTCAGATCTCTTCACCAAGTGGGATATCTGAAGCATTTGCATTAATCATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACAGCATGAAGGCATTGTTTCTCGAGGTAGCAATACATTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTAACGAGGTTAGTTAAATGTGGAACACAGAAAACAACTTTAGCTATCGGTGATGGTGCCAACGATGTCGGAATGCTTCAAGAAGCAGACATTGGAGTTGGAATTAGCGGTGTTGAAGGAATGCAGGCCGTTATGTCGAGCGACGTTGCGATAGCGCAGTTCAAATATCTAGAGCACTTGCTTCTTGTTCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTACAAGAACATTACTTTTGGTTTTACAATATTCTTATACGAAGCATTCACATCATTCTCTGGGCAGCCTGCATATAACGATTGGTTTTTATCGCTTTACAATGTTTTCTTCTCGTCACTTCCAGTGGTAGCTTTGGGCGTTTTTGATCAAGATGTCTCTGCAAGACTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCTATTCAGCTGGGTCCGAATTCTCAGTTGGATGTTTAATGGACTGTGCAGTGCTGTGATCATTTTCTCCCTATGCACTCGAGCGCTCGAGTATCAGGCGTTCAACTCCGACGGGAGAACTGCAGGGCGGGATATACTGGGTGCAACGATGTACTCCTGTGTTGTTTGGGTCGTGAACTTGCAAATGGCGCTTGCTGTTAGTTACTTCACCTTGATACAACATCTTTTCATCTGGGGTTCGGTTTCGATCTGGTACATTTTTCTCCTGATCTATGGGTCCATGACCCCCACGTTTTCAACCAATGGTTACAAGATCTTCATTGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTGCTTTTATTTGTGGTGATCTCAACACTCATTCCTTACTTCTCCTACTCAGCGATACAGATGAGGTTCCTTCCTATGTATCATCAAATGATTTTATGGATTAGGAATGAAGGTCAGCTGGAAAACCAAGAGTACTGTGATCTTTTGAGGTCAACAGCTCCTGATCAACGAGCATGGGTTCCACCGCACGGTTAG 3459 42.3 MSSGRRRKLHFSKIYSFACGKASLKDDHSQLGGPGFSRVVFCNEPKCFEAEIRSYIDNYVSTTKYTLATFLPKSLFEQFRRVANFYFLVTGILAFTPLAPYTAVSAIVPLILVILATMIKEGIEDWRRKKQDLEVNNRKVKVHHGDGVFGYTEWKNLMVGDIVKVEKDGFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMNEDFIFNSFKAILKCEDPNANLYSFVGSLELEEQQYPLSPQQLLLRGSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVEKKMDKIIYFLFCLLFLLALVGSIVFGVVTEDDLENGRMKRWYLRPDDARVFYDPKRSQMAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSMFINQDINMYYEEANKPARARTSNLNEELGQVDTILTDKTGTLTCNSMEFIKCSVAGRAYGQANGGKHHEDVKNKASHIKGFNFKDDRIMNGNWVNEPHANVIETFLRVLATCHTVIPEINEDNGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRTYKLLHVLEFNSSRKRMSVIVRNEEAKTLLFCKGADSVMFERLGKNGRVFEEETKEHVSEYADAGLRTLILAYRELDDEEYREFDSKFTMAKNSVSADRESLINQVTDKIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGLLRQDMKQIVITLETSEIQALEKTGDKASASRQSVLDQITRGRAQISSPSGISEAFALIIDGKSLSYALEDSMKALFLEVAIHCASVICCRSSPKQKALVTRLVKCGTQKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDVAIAQFKYLEHLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVLFSWVRILSWMFNGLCSAVIIFSLCTRALEYQAFNSDGRTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSVSIWYIFLLIYGSMTPTFSTNGYKIFIEVLAPGPSYWLVLLFVVISTLIPYFSYSAIQMRFLPMYHQMILWIRNEGQLENQEYCDLLRSTAPDQRAWVPPHG 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7868099 7874086 + CmaCh04G015530.1 Cma04g01553 292634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01553 1152 SUPERFAMILY HAD-like 419 890 IPR036412 -
Cma04g01553 1152 Pfam Phospholipid-translocating P-type ATPase C-terminal 863 1113 IPR032630 -
Cma04g01553 1152 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 451 - -
Cma04g01553 1152 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 800 917 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma04g01553 1152 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 106 213 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma04g01553 1152 Pfam E1-E2 ATPase 137 377 - -
Cma04g01553 1152 Pfam Cation transport ATPase (P-type) 508 605 - -
Cma04g01553 1152 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Cma04g01553 1152 SFLD C1.7: P-type atpase like 408 886 - -
Cma04g01553 1152 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1113 IPR023298 -
Cma04g01553 1152 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 451 - -
Cma04g01553 1152 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 646 IPR023299 GO:0000166
Cma04g01553 1152 Gene3D - 524 654 IPR023299 GO:0000166
Cma04g01553 1152 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 462 1140 - -
Cma04g01553 1152 Coils Coil 123 143 - -
Cma04g01553 1152 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 462 1140 - -
Cma04g01553 1152 SUPERFAMILY Calcium ATPase, transduction domain A 141 283 IPR008250 -
Cma04g01553 1152 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1119 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma04g01553 1152 CDD P-type_ATPase_APLT_Dnf-like 57 992 - -
Cma04g01553 1152 SFLD p-type atpase 408 886 IPR044492 -
Cma04g01553 1152 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Cma04g01553 1152 Gene3D - 112 286 - -
Cma04g01553 1152 Gene3D - 674 875 IPR023214 -
Cma04g01553 1152 PRINTS P-type cation-transporting ATPase superfamily signature 835 854 - -
Cma04g01553 1152 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01553 Cma-Chr4:7868099 Cma18g00030 Cma-Chr18:123057 0 dispersed
Cma15g01422 Cma-Chr15:8999195 Cma04g01553 Cma-Chr4:7868099 0 wgd
Cma18g01061 Cma-Chr18:8794419 Cma04g01553 Cma-Chr4:7868099 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01553 K01530 - csv:101207148 2058.11