Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01553 | ATGAGCAGCGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCTTGCGGGAAAGCTTCTTTAAAGGATGATCATTCACAACTTGGGGGACCTGGGTTCTCTCGTGTTGTTTTCTGTAATGAACCAAAGTGTTTTGAGGCAGAAATTCGTAGCTACATAGACAATTATGTTAGTACCACCAAGTATACTTTAGCTACTTTCCTTCCTAAGTCATTGTTTGAGCAATTCAGGAGAGTGGCCAATTTCTACTTTTTAGTCACTGGGATCCTTGCTTTTACTCCCCTTGCTCCTTACACCGCTGTCAGCGCCATCGTCCCTCTTATTCTCGTCATCTTGGCGACGATGATCAAAGAAGGGATCGAGGATTGGAGGCGCAAAAAACAGGATCTTGAGGTAAACAATAGAAAGGTAAAAGTGCACCATGGAGATGGAGTTTTTGGTTATACAGAGTGGAAGAATCTGATGGTTGGTGATATTGTGAAAGTAGAGAAGGACGGATTCTTTCCAGCTGATATTATCTTGCTTTCATCAAGTTATGAGGATGCAATCTGCTACGTCGAGACAATGAATCTCGACGGCGAGACAAATTTGAAACTAAAACAAGCGTTGGAGGTAACGTCGCATATGAACGAAGATTTTATCTTCAATAGCTTTAAGGCTATCCTAAAATGTGAGGACCCAAATGCAAATTTATACAGTTTTGTTGGTAGTTTAGAGCTGGAAGAACAACAATATCCTCTGTCTCCTCAACAGCTACTCCTTCGAGGCTCTAAGCTTCGGAATACGGATTATATATATGGGGTTGTTGTCTTTACGGGTCGTGACACGAAGGTTATTCAGAATTCTACTGATCCACCTTCAAAGAGAAGCAAAGTTGAGAAGAAAATGGATAAGATTATATATTTTTTGTTCTGTCTTCTGTTTTTGCTTGCTCTTGTAGGATCTATAGTTTTTGGCGTTGTGACTGAGGATGATTTGGAGAATGGGAGAATGAAACGATGGTATCTGAGGCCTGATGATGCTAGAGTTTTCTATGATCCAAAAAGGTCTCAAATGGCTGCAATTTTCCATTTTCTTACTGCACTGATGTTATATAACTACTTCATTCCAATATCACTGTATGTATCAATAGAAATTGTGAAAGTTCTTCAGAGCATGTTCATCAATCAAGATATTAATATGTATTATGAAGAAGCGAATAAACCCGCTCGTGCTCGCACCTCGAATTTGAATGAAGAACTCGGTCAAGTCGATACGATACTCACTGACAAGACGGGAACTTTGACATGTAATTCAATGGAGTTCATCAAGTGTTCTGTGGCAGGGAGGGCTTATGGTCAGGCAAATGGGGGGAAGCACCATGAGGATGTTAAGAATAAAGCTTCACATATCAAAGGTTTTAACTTTAAGGATGATAGGATTATGAATGGGAATTGGGTTAATGAGCCTCATGCCAATGTCATCGAAACTTTTCTCCGTGTTCTTGCGACTTGTCATACGGTGATACCCGAAATCAATGAGGACAATGGAGAGGTTTCTTACGAGGCCGAATCTCCAGACGAAGCAGCATTCGTGATTGCTGCTAGAGAACTCGGATTCGAGTTCTACAAAAGAACACAGACAAGTATATCACTGCATGAGTTTGATCCTTCATTAGGCAAGAAAGTTGATAGGACATATAAACTGCTGCATGTTTTGGAGTTCAACAGCTCAAGAAAGCGGATGTCTGTCATAGTAAGAAATGAAGAGGCCAAGACATTGTTATTCTGTAAAGGTGCAGACAGTGTTATGTTTGAAAGGCTTGGAAAGAATGGGAGGGTGTTTGAGGAGGAGACCAAGGAACATGTCAGTGAGTATGCTGATGCAGGATTGAGGACTTTGATACTCGCCTATCGCGAGCTCGACGACGAAGAATACAGAGAGTTTGATAGCAAGTTCACTATGGCGAAAAACTCGGTTAGTGCAGACCGAGAGTCGTTGATTAATCAAGTGACCGATAAAATCGAAAGAAATCTGATTCTTCTTGGTGCCACTGCTGTTGAAGACAAGCTTCAAAATGGGGTTCCTGAGTGCATTGATAGGCTTGCTCAAGCTGGAATAAAGATTTGGGTATTGACTGGGGACAAAATGGAGACTGCTATCAATATTGGATTACTGAGACAAGATATGAAGCAGATTGTAATTACTCTCGAGACGTCGGAAATTCAGGCGTTGGAGAAAACGGGGGATAAGGCTTCTGCATCAAGGCAAAGCGTCCTCGATCAAATTACTCGAGGGAGAGCTCAGATCTCTTCACCAAGTGGGATATCTGAAGCATTTGCATTAATCATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACAGCATGAAGGCATTGTTTCTCGAGGTAGCAATACATTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTAACGAGGTTAGTTAAATGTGGAACACAGAAAACAACTTTAGCTATCGGTGATGGTGCCAACGATGTCGGAATGCTTCAAGAAGCAGACATTGGAGTTGGAATTAGCGGTGTTGAAGGAATGCAGGCCGTTATGTCGAGCGACGTTGCGATAGCGCAGTTCAAATATCTAGAGCACTTGCTTCTTGTTCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTACAAGAACATTACTTTTGGTTTTACAATATTCTTATACGAAGCATTCACATCATTCTCTGGGCAGCCTGCATATAACGATTGGTTTTTATCGCTTTACAATGTTTTCTTCTCGTCACTTCCAGTGGTAGCTTTGGGCGTTTTTGATCAAGATGTCTCTGCAAGACTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCTATTCAGCTGGGTCCGAATTCTCAGTTGGATGTTTAATGGACTGTGCAGTGCTGTGATCATTTTCTCCCTATGCACTCGAGCGCTCGAGTATCAGGCGTTCAACTCCGACGGGAGAACTGCAGGGCGGGATATACTGGGTGCAACGATGTACTCCTGTGTTGTTTGGGTCGTGAACTTGCAAATGGCGCTTGCTGTTAGTTACTTCACCTTGATACAACATCTTTTCATCTGGGGTTCGGTTTCGATCTGGTACATTTTTCTCCTGATCTATGGGTCCATGACCCCCACGTTTTCAACCAATGGTTACAAGATCTTCATTGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTGCTTTTATTTGTGGTGATCTCAACACTCATTCCTTACTTCTCCTACTCAGCGATACAGATGAGGTTCCTTCCTATGTATCATCAAATGATTTTATGGATTAGGAATGAAGGTCAGCTGGAAAACCAAGAGTACTGTGATCTTTTGAGGTCAACAGCTCCTGATCAACGAGCATGGGTTCCACCGCACGGTTAG | 3459 | 42.3 | MSSGRRRKLHFSKIYSFACGKASLKDDHSQLGGPGFSRVVFCNEPKCFEAEIRSYIDNYVSTTKYTLATFLPKSLFEQFRRVANFYFLVTGILAFTPLAPYTAVSAIVPLILVILATMIKEGIEDWRRKKQDLEVNNRKVKVHHGDGVFGYTEWKNLMVGDIVKVEKDGFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMNEDFIFNSFKAILKCEDPNANLYSFVGSLELEEQQYPLSPQQLLLRGSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVEKKMDKIIYFLFCLLFLLALVGSIVFGVVTEDDLENGRMKRWYLRPDDARVFYDPKRSQMAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSMFINQDINMYYEEANKPARARTSNLNEELGQVDTILTDKTGTLTCNSMEFIKCSVAGRAYGQANGGKHHEDVKNKASHIKGFNFKDDRIMNGNWVNEPHANVIETFLRVLATCHTVIPEINEDNGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRTYKLLHVLEFNSSRKRMSVIVRNEEAKTLLFCKGADSVMFERLGKNGRVFEEETKEHVSEYADAGLRTLILAYRELDDEEYREFDSKFTMAKNSVSADRESLINQVTDKIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGLLRQDMKQIVITLETSEIQALEKTGDKASASRQSVLDQITRGRAQISSPSGISEAFALIIDGKSLSYALEDSMKALFLEVAIHCASVICCRSSPKQKALVTRLVKCGTQKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDVAIAQFKYLEHLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVLFSWVRILSWMFNGLCSAVIIFSLCTRALEYQAFNSDGRTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSVSIWYIFLLIYGSMTPTFSTNGYKIFIEVLAPGPSYWLVLLFVVISTLIPYFSYSAIQMRFLPMYHQMILWIRNEGQLENQEYCDLLRSTAPDQRAWVPPHG | 1152 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7868099 | 7874086 | + | CmaCh04G015530.1 | Cma04g01553 | 292634 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01553 | 1152 | SUPERFAMILY | HAD-like | 419 | 890 | IPR036412 | - | |
Cma04g01553 | 1152 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 863 | 1113 | IPR032630 | - | |
Cma04g01553 | 1152 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 1 | 451 | - | - | |
Cma04g01553 | 1152 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 800 | 917 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma04g01553 | 1152 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 106 | 213 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cma04g01553 | 1152 | Pfam | E1-E2 ATPase | 137 | 377 | - | - | |
Cma04g01553 | 1152 | Pfam | Cation transport ATPase (P-type) | 508 | 605 | - | - | |
Cma04g01553 | 1152 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 426 | 432 | IPR018303 | - | |
Cma04g01553 | 1152 | SFLD | C1.7: P-type atpase like | 408 | 886 | - | - | |
Cma04g01553 | 1152 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 54 | 1113 | IPR023298 | - | |
Cma04g01553 | 1152 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 1 | 451 | - | - | |
Cma04g01553 | 1152 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 431 | 646 | IPR023299 | GO:0000166 | |
Cma04g01553 | 1152 | Gene3D | - | 524 | 654 | IPR023299 | GO:0000166 | |
Cma04g01553 | 1152 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 462 | 1140 | - | - | |
Cma04g01553 | 1152 | Coils | Coil | 123 | 143 | - | - | |
Cma04g01553 | 1152 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 462 | 1140 | - | - | |
Cma04g01553 | 1152 | SUPERFAMILY | Calcium ATPase, transduction domain A | 141 | 283 | IPR008250 | - | |
Cma04g01553 | 1152 | TIGRFAM | ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase | 55 | 1119 | IPR006539 | GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326 | |
Cma04g01553 | 1152 | CDD | P-type_ATPase_APLT_Dnf-like | 57 | 992 | - | - | |
Cma04g01553 | 1152 | SFLD | p-type atpase | 408 | 886 | IPR044492 | - | |
Cma04g01553 | 1152 | Pfam | Phospholipid-translocating ATPase N-terminal | 41 | 106 | IPR032631 | - | |
Cma04g01553 | 1152 | Gene3D | - | 112 | 286 | - | - | |
Cma04g01553 | 1152 | Gene3D | - | 674 | 875 | IPR023214 | - | |
Cma04g01553 | 1152 | PRINTS | P-type cation-transporting ATPase superfamily signature | 835 | 854 | - | - | |
Cma04g01553 | 1152 | PRINTS | P-type cation-transporting ATPase superfamily signature | 424 | 438 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01553 | Cma-Chr4:7868099 | Cma18g00030 | Cma-Chr18:123057 | 0 | dispersed | |
Cma15g01422 | Cma-Chr15:8999195 | Cma04g01553 | Cma-Chr4:7868099 | 0 | wgd | |
Cma18g01061 | Cma-Chr18:8794419 | Cma04g01553 | Cma-Chr4:7868099 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01553 | K01530 | - | csv:101207148 | 2058.11 |