Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01554 | ATGCTTTCCATAATTGGGTTTGCAGTATGGTACATGAGGAAGCCAAGGAAAAATGATACCGGGCATGGGGGCATTATGCCATCCTCTCTCAGCTCCTCTCCTAAGTCGGAATCATCCCTTATGAAGGTCCATTCCACAGTTCATCAAAACATCCATGCCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGCGGTGGCGGTGGCGGTGGCGGTGGCAGTGGTGGAATATACACTCCAAGAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATATGAAGAACTCTTCAAAGCAACAAATGCCTTTTCTGCGCAGAACCTTTTGGGAGAAGGCGGGTTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGAGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGGCAGGGCGAGCAGGAATTCAAAGCTGAAGTTGAGATTATTGGCCGTGTTCACCACCGCCACTTGGTTTCTCTTGTCGGCTATTGCATTTCAGAGCATCAAAGGTTGCTTGTCTATGATTATGTGCCTAATAACTCCCTCTACTACCATCTTCATCTTAAAGGGGATGGTGAGCTCGTTCTGGAATGGGCAAAACGCTATAAGATAGCAGCTGGTGCAGCACGGGGAATTGCATATCTTCATGAAGACTGCCATCCTCGAATCATCCACCGTGATATCAAATCTTCGAACATTCTTCTAGACAAAAATTTCGAAGCTCGGGTTTCAGACTTTGGGCTTGCTAAGTTAGCTCTGGATGAACAAACTCATATAACTACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGCGGAAAGTTAACTGAGCGATCAGATGTATATTCTTTCGGAGTTGTACTTCTCGAGCTGATTACGGGTCGGAAGGCTGTGGACTCGTCCCAACCAATGGGGGATGAGAGCCTTGTTGAATGGGCTCGGCCTTTACTAAACCACGCACTCAACAACAGCCAAGACTCCAAAAACTTGGTGGATCCTAGGCTTGAAAGGAACTATATAGAGAGTGAAATGTTGAGGATGATAGGAATAGCTGCTGCTTGCGTGCGCCATGCATCTGCCAAGAGACCACACATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGGCACTGCAGATTTAAGCAATGGAATGAGATTTGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAATCTGCCGAGCTTAGATTTTTCCGAATGCTGGCGTTCGGTAACCAAGATTACAGTTCAGAATTCTATAGCCAAGGAAGGCTTTTTTCCATGCCCACTGGAACTCAGGTTGATACCAAGAGCACCTTCTTCATGTTCATTTTCCCTTTCAATTCTGTCATCAAACCAAAGGAAAGCCCCACACCTGTACCTCACCCATCTCTCCGATTCCCAAATTCCCTAACCTCGACCAACTCCTCCCCGTGGATCCTCTCGAATCGCGAATCCATGGCTTCTATGCAATCCGATCAGCTCAAGCAGCTGCACGACATTTTCAGGCGCTTCGACATGAACTCCGACGGTAGCCTCACGCAGCTCGAGCTTGGCGCCCTCCTCCGCTCCCTCGGCATCAAGCCCTCCGGCGACCAACTCCATTCTCTCCTCTCCAATATGGATTCCAACGGCAACGGCTCCATCGAATTCGACGAATTGGTCAATGCGATTCTCCCCGATTTAAACGACAATATTCTCGTCAATCAAGAGCAGTTGATGGAGGTTTTCAAATCCTTTGATCGTGACGGCAATGGCTTCATCACTGCCTCCGAGCTCGCCGGTTCCATGGCTAAGATGGGTCATCCTCTGTCCTACCGCGAACTTTCCGAGATGATGCGGCAGGCCGACACCGACGGCGATGGCGTAATTAGCTTCAACGAATTCACCACCGTCATGGCCAGGTCCGCCGCAGATTTTCTCGGCCTTACATTTGCGTAG | 1959 | 49.06 | MLSIIGFAVWYMRKPRKNDTGHGGIMPSSLSSSPKSESSLMKVHSTVHQNIHASGSGSGSGSGGGGGGGGGSGGIYTPRELGGLGSSRPLFTYEELFKATNAFSAQNLLGEGGFGSVYKGYLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGDGELVLEWAKRYKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDKNFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDSSQPMGDESLVEWARPLLNHALNNSQDSKNLVDPRLERNYIESEMLRMIGIAAACVRHASAKRPHMGQVVRAFDSLGTADLSNGMRFGESQAFDSGQQSAELRFFRMLAFGNQDYSSEFYSQGRLFSMPTGTQVDTKSTFFMFIFPFNSVIKPKESPTPVPHPSLRFPNSLTSTNSSPWILSNRESMASMQSDQLKQLHDIFRRFDMNSDGSLTQLELGALLRSLGIKPSGDQLHSLLSNMDSNGNGSIEFDELVNAILPDLNDNILVNQEQLMEVFKSFDRDGNGFITASELAGSMAKMGHPLSYRELSEMMRQADTDGDGVISFNEFTTVMARSAADFLGLTFA | 652 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7874847 | 7879140 | - | CmaCh04G015540.1 | Cma04g01554 | 292635 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01554 | 652 | ProSitePatterns | Protein kinases ATP-binding region signature. | 109 | 131 | IPR017441 | GO:0005524 | |
Cma04g01554 | 652 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 499 | 534 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 610 | 645 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | Pfam | Protein kinase domain | 105 | 375 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g01554 | 652 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672|GO:0006468 | |
Cma04g01554 | 652 | Gene3D | - | 574 | 647 | - | - | |
Cma04g01554 | 652 | CDD | EFh | 578 | 640 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | Gene3D | Transferase(Phosphotransferase) domain 1 | 179 | 393 | - | - | |
Cma04g01554 | 652 | ProSitePatterns | EF-hand calcium-binding domain. | 512 | 524 | IPR018247 | - | |
Cma04g01554 | 652 | Gene3D | Phosphorylase Kinase; domain 1 | 82 | 178 | - | - | |
Cma04g01554 | 652 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 574 | 609 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | ProSiteProfiles | Protein kinase domain profile. | 103 | 382 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g01554 | 652 | ProSitePatterns | EF-hand calcium-binding domain. | 548 | 560 | IPR018247 | - | |
Cma04g01554 | 652 | PANTHER | OS01G0253100 PROTEIN | 1 | 426 | IPR045271 | GO:0004714|GO:0006468 | |
Cma04g01554 | 652 | SUPERFAMILY | EF-hand | 493 | 641 | IPR011992 | - | |
Cma04g01554 | 652 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 535 | 570 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK10 | 1 | 426 | - | - | |
Cma04g01554 | 652 | SUPERFAMILY | Protein kinase-like (PK-like) | 85 | 377 | IPR011009 | - | |
Cma04g01554 | 652 | MobiDBLite | consensus disorder prediction | 24 | 61 | - | - | |
Cma04g01554 | 652 | Pfam | EF-hand domain pair | 577 | 639 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | Pfam | EF-hand domain pair | 502 | 563 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | SMART | serkin_6 | 103 | 352 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g01554 | 652 | Gene3D | - | 472 | 572 | - | - | |
Cma04g01554 | 652 | CDD | STKc_IRAK | 109 | 382 | - | - | |
Cma04g01554 | 652 | ProSitePatterns | EF-hand calcium-binding domain. | 587 | 599 | IPR018247 | - | |
Cma04g01554 | 652 | ProSitePatterns | EF-hand calcium-binding domain. | 623 | 635 | IPR018247 | - | |
Cma04g01554 | 652 | MobiDBLite | consensus disorder prediction | 18 | 78 | - | - | |
Cma04g01554 | 652 | SMART | efh_1 | 578 | 606 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | SMART | efh_1 | 614 | 642 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | SMART | efh_1 | 539 | 567 | IPR002048 | GO:0005509 | |
Cma04g01554 | 652 | SMART | efh_1 | 503 | 531 | IPR002048 | GO:0005509 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01554 | Cma-Chr4:7874847 | Cma15g00198 | Cma-Chr15:963133 | 1.25E-176 | dispersed | |
Cma06g00635 | Cma-Chr6:3123662 | Cma04g01554 | Cma-Chr4:7874847 | 7.78E-50 | dispersed | |
Cma16g01180 | Cma-Chr16:9024443 | Cma04g01554 | Cma-Chr4:7874847 | 5.81E-44 | dispersed | |
Cma10g00261 | Cma-Chr10:1161545 | Cma04g01554 | Cma-Chr4:7874847 | 6.05E-83 | wgd | |
Cma18g01062 | Cma-Chr18:8802449 | Cma04g01554 | Cma-Chr4:7874847 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68509 | PF00069 | Pkinase | 4.70E-44 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01554 | - | - | cmo:103489228 | 741.11 |