Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01554 ATGCTTTCCATAATTGGGTTTGCAGTATGGTACATGAGGAAGCCAAGGAAAAATGATACCGGGCATGGGGGCATTATGCCATCCTCTCTCAGCTCCTCTCCTAAGTCGGAATCATCCCTTATGAAGGTCCATTCCACAGTTCATCAAAACATCCATGCCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGCGGTGGCGGTGGCGGTGGCGGTGGCAGTGGTGGAATATACACTCCAAGAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATATGAAGAACTCTTCAAAGCAACAAATGCCTTTTCTGCGCAGAACCTTTTGGGAGAAGGCGGGTTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGAGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGGCAGGGCGAGCAGGAATTCAAAGCTGAAGTTGAGATTATTGGCCGTGTTCACCACCGCCACTTGGTTTCTCTTGTCGGCTATTGCATTTCAGAGCATCAAAGGTTGCTTGTCTATGATTATGTGCCTAATAACTCCCTCTACTACCATCTTCATCTTAAAGGGGATGGTGAGCTCGTTCTGGAATGGGCAAAACGCTATAAGATAGCAGCTGGTGCAGCACGGGGAATTGCATATCTTCATGAAGACTGCCATCCTCGAATCATCCACCGTGATATCAAATCTTCGAACATTCTTCTAGACAAAAATTTCGAAGCTCGGGTTTCAGACTTTGGGCTTGCTAAGTTAGCTCTGGATGAACAAACTCATATAACTACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGCGGAAAGTTAACTGAGCGATCAGATGTATATTCTTTCGGAGTTGTACTTCTCGAGCTGATTACGGGTCGGAAGGCTGTGGACTCGTCCCAACCAATGGGGGATGAGAGCCTTGTTGAATGGGCTCGGCCTTTACTAAACCACGCACTCAACAACAGCCAAGACTCCAAAAACTTGGTGGATCCTAGGCTTGAAAGGAACTATATAGAGAGTGAAATGTTGAGGATGATAGGAATAGCTGCTGCTTGCGTGCGCCATGCATCTGCCAAGAGACCACACATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGGCACTGCAGATTTAAGCAATGGAATGAGATTTGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAATCTGCCGAGCTTAGATTTTTCCGAATGCTGGCGTTCGGTAACCAAGATTACAGTTCAGAATTCTATAGCCAAGGAAGGCTTTTTTCCATGCCCACTGGAACTCAGGTTGATACCAAGAGCACCTTCTTCATGTTCATTTTCCCTTTCAATTCTGTCATCAAACCAAAGGAAAGCCCCACACCTGTACCTCACCCATCTCTCCGATTCCCAAATTCCCTAACCTCGACCAACTCCTCCCCGTGGATCCTCTCGAATCGCGAATCCATGGCTTCTATGCAATCCGATCAGCTCAAGCAGCTGCACGACATTTTCAGGCGCTTCGACATGAACTCCGACGGTAGCCTCACGCAGCTCGAGCTTGGCGCCCTCCTCCGCTCCCTCGGCATCAAGCCCTCCGGCGACCAACTCCATTCTCTCCTCTCCAATATGGATTCCAACGGCAACGGCTCCATCGAATTCGACGAATTGGTCAATGCGATTCTCCCCGATTTAAACGACAATATTCTCGTCAATCAAGAGCAGTTGATGGAGGTTTTCAAATCCTTTGATCGTGACGGCAATGGCTTCATCACTGCCTCCGAGCTCGCCGGTTCCATGGCTAAGATGGGTCATCCTCTGTCCTACCGCGAACTTTCCGAGATGATGCGGCAGGCCGACACCGACGGCGATGGCGTAATTAGCTTCAACGAATTCACCACCGTCATGGCCAGGTCCGCCGCAGATTTTCTCGGCCTTACATTTGCGTAG 1959 49.06 MLSIIGFAVWYMRKPRKNDTGHGGIMPSSLSSSPKSESSLMKVHSTVHQNIHASGSGSGSGSGGGGGGGGGSGGIYTPRELGGLGSSRPLFTYEELFKATNAFSAQNLLGEGGFGSVYKGYLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGDGELVLEWAKRYKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDKNFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDSSQPMGDESLVEWARPLLNHALNNSQDSKNLVDPRLERNYIESEMLRMIGIAAACVRHASAKRPHMGQVVRAFDSLGTADLSNGMRFGESQAFDSGQQSAELRFFRMLAFGNQDYSSEFYSQGRLFSMPTGTQVDTKSTFFMFIFPFNSVIKPKESPTPVPHPSLRFPNSLTSTNSSPWILSNRESMASMQSDQLKQLHDIFRRFDMNSDGSLTQLELGALLRSLGIKPSGDQLHSLLSNMDSNGNGSIEFDELVNAILPDLNDNILVNQEQLMEVFKSFDRDGNGFITASELAGSMAKMGHPLSYRELSEMMRQADTDGDGVISFNEFTTVMARSAADFLGLTFA 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7874847 7879140 - CmaCh04G015540.1 Cma04g01554 292635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01554 652 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Cma04g01554 652 ProSiteProfiles EF-hand calcium-binding domain profile. 499 534 IPR002048 GO:0005509
Cma04g01554 652 ProSiteProfiles EF-hand calcium-binding domain profile. 610 645 IPR002048 GO:0005509
Cma04g01554 652 Pfam Protein kinase domain 105 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01554 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Cma04g01554 652 Gene3D - 574 647 - -
Cma04g01554 652 CDD EFh 578 640 IPR002048 GO:0005509
Cma04g01554 652 Gene3D Transferase(Phosphotransferase) domain 1 179 393 - -
Cma04g01554 652 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Cma04g01554 652 Gene3D Phosphorylase Kinase; domain 1 82 178 - -
Cma04g01554 652 ProSiteProfiles EF-hand calcium-binding domain profile. 574 609 IPR002048 GO:0005509
Cma04g01554 652 ProSiteProfiles Protein kinase domain profile. 103 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01554 652 ProSitePatterns EF-hand calcium-binding domain. 548 560 IPR018247 -
Cma04g01554 652 PANTHER OS01G0253100 PROTEIN 1 426 IPR045271 GO:0004714|GO:0006468
Cma04g01554 652 SUPERFAMILY EF-hand 493 641 IPR011992 -
Cma04g01554 652 ProSiteProfiles EF-hand calcium-binding domain profile. 535 570 IPR002048 GO:0005509
Cma04g01554 652 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK10 1 426 - -
Cma04g01554 652 SUPERFAMILY Protein kinase-like (PK-like) 85 377 IPR011009 -
Cma04g01554 652 MobiDBLite consensus disorder prediction 24 61 - -
Cma04g01554 652 Pfam EF-hand domain pair 577 639 IPR002048 GO:0005509
Cma04g01554 652 Pfam EF-hand domain pair 502 563 IPR002048 GO:0005509
Cma04g01554 652 SMART serkin_6 103 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01554 652 Gene3D - 472 572 - -
Cma04g01554 652 CDD STKc_IRAK 109 382 - -
Cma04g01554 652 ProSitePatterns EF-hand calcium-binding domain. 587 599 IPR018247 -
Cma04g01554 652 ProSitePatterns EF-hand calcium-binding domain. 623 635 IPR018247 -
Cma04g01554 652 MobiDBLite consensus disorder prediction 18 78 - -
Cma04g01554 652 SMART efh_1 578 606 IPR002048 GO:0005509
Cma04g01554 652 SMART efh_1 614 642 IPR002048 GO:0005509
Cma04g01554 652 SMART efh_1 539 567 IPR002048 GO:0005509
Cma04g01554 652 SMART efh_1 503 531 IPR002048 GO:0005509
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01554 Cma-Chr4:7874847 Cma15g00198 Cma-Chr15:963133 1.25E-176 dispersed
Cma06g00635 Cma-Chr6:3123662 Cma04g01554 Cma-Chr4:7874847 7.78E-50 dispersed
Cma16g01180 Cma-Chr16:9024443 Cma04g01554 Cma-Chr4:7874847 5.81E-44 dispersed
Cma10g00261 Cma-Chr10:1161545 Cma04g01554 Cma-Chr4:7874847 6.05E-83 wgd
Cma18g01062 Cma-Chr18:8802449 Cma04g01554 Cma-Chr4:7874847 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68509 PF00069 Pkinase 4.70E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01554 - - cmo:103489228 741.11