Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01560 ATGCTTCAACAACTTTTCATTTTGTTCTTCTTGTTCTTGTTTTGCTTAAGGAATTCTTCTGTAAATGCTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTGCAAGCCCTGATGGCCATCAAAGCTGCTCTGAAAGACCCTCATTCTGTTCTTAATTGGGATGAAAATGCTGTGGATCCATGTAGCTGGACCATGATCACCTGTTCTCCACACAAACTCGTCATTTCCTTAGGAGCTCCTAGTCAGAACTTGTCGGGTACCCTGTCGCCGAGCGTCGGAAATTTGACAAATCTTCAGTCGGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTGCCCTTGCCACTCTTGATCTTTCAAGCAATGCCTTCCATGGACAAATTCCCACATCTTTCTCCCATCTTAAGAGTCTTCAATATCTGAGGCTAAATAATAACAGTCTTTCTGGGGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGCTGGATCTGTCTTTTAATAATCTGAGTGGCCCATTGCCCAGATTGCTACCTAAAACCTACAACCTTGCTGGGAATTCGCTCATTTGCTCACTTGGGTCCGAGCATAGCTGCAATGGCACTGCTCCACCTCTCTTATTTGCAGACGATACGCCTCAGACACCTTCTGGGAGATCCAAGAGCCACAGATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGCGTTGTTCTGCTGACAATTGGGTTAGGCTGCTTCATTTGGTGGAGGCAACGATACAACCAGCAGATTTTCTTTGATGTTAATGATCAACGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGAGCTTCAAGCTGCCACAAATAACTTCAGCAGTAAAAACTTGGTGGGAAAGGGTGGGTTTGGGTATGTGTACAAAGGGTACCTTCAAGATGGTACAGTTGTAGCTGTGAAGAGGCTAAAAGATGGAAATGCTATCAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCCTAGCTGTGCACCGGAACCTCCTCCGTCTTTACGGGTTCTGTACGACAACCTCAGAGAGACTGTTGGTTTACCCCTATATGTCCAACGGCAGTGTCGCATCCCGTCTCAAAGCAAAGCCAGCTCTGGATTGGAGCGTGAGGAAAAGAATAGCATTGGGTGCAGCAAGAGGGTTGCTGTATCTTCATGAGCAGTGTGACCCTAAGATCATACATAGGGATGTTAAGGCTGCAAATATATTGCTTGATGATTACTGCGAGGCTGTGGTGGGAGATTTCGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGCGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAGACTGATGTCTTTGGATTTGGAATCCTTCTTCTTGAGCTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCTAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTAACCAAGAAAAGAAGCTTGAAATACTAGTTGACAAGAATCTAAGGAAAACTTACGACTGGATCGAGCTTGAAGAAATGGTTCAAGTAGCTCTCTTATGTACGCAGTACCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGAGATGGACTTGCAGAGAAATGGGAAGCTTCTCAGAGGGAAGATGCAAACAGGTACAGAGGCAATGAATTCTCCTCTTCCGGGCGATATTCTGATCTTACAGATGATTCTTCCTTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1860 45.05 MLQQLFILFFLFLFCLRNSSVNALLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWTMITCSPHKLVISLGAPSQNLSGTLSPSVGNLTNLQSVLLQDNNISGTIPMELGNIPALATLDLSSNAFHGQIPTSFSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLPKTYNLAGNSLICSLGSEHSCNGTAPPLLFADDTPQTPSGRSKSHRLALAFGSSLGCVVLLTIGLGCFIWWRQRYNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGYVYKGYLQDGTVVAVKRLKDGNAIRGEIQFQTEVEMISLAVHRNLLRLYGFCTTTSERLLVYPYMSNGSVASRLKAKPALDWSVRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKINQEKKLEILVDKNLRKTYDWIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQREDANRYRGNEFSSSGRYSDLTDDSSLLAQAMELSGPR 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7925882 7928772 + CmaCh04G015600.1 Cma04g01560 292641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01560 619 Pfam Protein kinase domain 300 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01560 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 619 - -
Cma04g01560 619 SMART serkin_6 299 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01560 619 Gene3D Ribonuclease Inhibitor 30 211 IPR032675 -
Cma04g01560 619 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cma04g01560 619 SUPERFAMILY L domain-like 33 194 - -
Cma04g01560 619 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Cma04g01560 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Cma04g01560 619 SUPERFAMILY Protein kinase-like (PK-like) 277 569 IPR011009 -
Cma04g01560 619 ProSiteProfiles Protein kinase domain profile. 299 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01560 619 Pfam Leucine rich repeat 120 180 IPR001611 GO:0005515
Cma04g01560 619 Gene3D Transferase(Phosphotransferase) domain 1 376 588 - -
Cma04g01560 619 MobiDBLite consensus disorder prediction 579 605 - -
Cma04g01560 619 MobiDBLite consensus disorder prediction 590 605 - -
Cma04g01560 619 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 7 619 - -
Cma04g01560 619 Gene3D Phosphorylase Kinase; domain 1 268 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01560 Cma-Chr4:7925882 Cma04g02193 Cma-Chr4:15292397 0 dispersed
Cma18g01070 Cma-Chr18:8860581 Cma04g01560 Cma-Chr4:7925882 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68510 PF00069 Pkinase 1.60E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01560 - - csv:101208127 1094.34