Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01562 ATGGCCATTGATTCCTCTCCGAGCCTCGTTTATGGGCTGCTGCTGCTGTTGCTTTCTGCTTTCTTCGCTCTGAGCCAGAGCTTGTATGACACAGGTGACCCCCCTTTGACGTTGGATTACTATGCCAAAACTTGTCCTAATGTGTTGCAGGTTGTGCGGAAAGAGATGGAGTGTGCAGTGCTTTCTGACCCACGTAATGCAGCTTTTGCTGTCCGATTGCACTTTCACGACTGCTTTGTCCAGGGGTGTGATGGGTCAATTCTGCTGGACGACACTATAACATTACAGGGAGAAAAAAAGGCTTCCACTAACATACACTCCCTCAAAGGCTTTAGAATGATGGATAGGATAAAGAACAGCCTTGAATCAGAATGTCCTGGGATTGTTTCTTGTGCTGATATACTCACTATTGCAGCCAGGGATGCAGTGATTCTGGTCGGCGGCCCTTACTGGGAGGTCCCTCTTGGAAGAAAGGATTCCACAACTGCAAGCTATGAACTTGCAAACCAAAATATTCCCTCTGCCAATGAGGGCCTTCTGAGCATCATCTCCAAGTTTCTTTATCAGGGCCTCTCCGTAACCGACATGGTAGCTCTATCAGGAGCACACACGATTGGAATGGCGAGGTGCAAGAATTTCAGGGAAAGGATTTATGGGGATTTCGAAGCGACATTGGATGCTAACAACCCGATTTCGAAGATGTATATCGAAAAGTTGAGGTCTATATGTCCTCCAATTGGGAAAGATGCAGAGAAGAACATAACAGGAATGGACAATGTGACGCCAGAGGTGTTTGATAACTCCTATTTCCAGATGTTGATGAGGGGAGAAGGGGTTTTGAATTCAGATCAGGAATTGTATTCCAGCCTTCTGGGCATGGAAACCAGGGCGCTGGTGAAGAAATATGCGGTTGACCCACTTGCTTTCTTTCAGCAGTTCTCTGATTCCATGGTGAAGTTGGGAAATATCACCAACTCTGATAGCTTTTTGAGTGGGGAAGTTAGGAAAAATTGCAGGTTTATCAACACATGA 1032 46.12 MAIDSSPSLVYGLLLLLLSAFFALSQSLYDTGDPPLTLDYYAKTCPNVLQVVRKEMECAVLSDPRNAAFAVRLHFHDCFVQGCDGSILLDDTITLQGEKKASTNIHSLKGFRMMDRIKNSLESECPGIVSCADILTIAARDAVILVGGPYWEVPLGRKDSTTASYELANQNIPSANEGLLSIISKFLYQGLSVTDMVALSGAHTIGMARCKNFRERIYGDFEATLDANNPISKMYIEKLRSICPPIGKDAEKNITGMDNVTPEVFDNSYFQMLMRGEGVLNSDQELYSSLLGMETRALVKKYAVDPLAFFQQFSDSMVKLGNITNSDSFLSGEVRKNCRFINT 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7939483 7943658 - CmaCh04G015620.1 Cma04g01562 292643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01562 343 PANTHER PEROXIDASE 11 28 341 - -
Cma04g01562 343 Gene3D Peroxidase, domain 2 173 320 - -
Cma04g01562 343 PRINTS Plant peroxidase signature 45 64 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Plant peroxidase signature 69 89 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Plant peroxidase signature 128 138 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Plant peroxidase signature 147 162 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Plant peroxidase signature 194 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Plant peroxidase signature 256 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Plant peroxidase signature 272 289 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Plant peroxidase signature 315 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PANTHER PEROXIDASE 72-RELATED 28 341 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 SUPERFAMILY Heme-dependent peroxidases 36 342 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 Pfam Peroxidase 52 304 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Haem peroxidase superfamily signature 67 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Haem peroxidase superfamily signature 129 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Haem peroxidase superfamily signature 147 159 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 PRINTS Haem peroxidase superfamily signature 258 273 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 CDD secretory_peroxidase 36 341 IPR033905 GO:0004601|GO:0042744
Cma04g01562 343 ProSiteProfiles Plant heme peroxidase family profile. 35 342 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g01562 343 Gene3D - 39 342 - -
Cma04g01562 343 ProSitePatterns Peroxidases active site signature. 67 78 IPR019794 GO:0004601
Cma04g01562 343 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01562 Cma-Chr4:7939483 Cma03g00716 Cma-Chr3:5790882 6.21E-96 dispersed
Cma04g01562 Cma-Chr4:7939483 Cma18g01072 Cma-Chr18:8867931 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01562 K00430 - csv:101216779 570.081