Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01570 ATGGATAATTCTATCAGCTGTACGCATAGCATGTTTTCGGATATGAGATTTGGCGAGACGACTCTCACCAGTATGCCAGTGGCTGTGGGTGAGCCATTTAGCTCTACTGTTTGGGAACAAGCAGCTAATTCCCAAAACATGGGAACTAGCAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCACTGATATCAGCTGGAACCTATCACATAATATGTTTAAAGGGGGGATTTATCTACCTCACGGCATGCTCCCACAGAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAGCGTGCAGCCAGGCTCTCCTGTTTTAGTGGTGGGAATTTTGGTGATATTGTTGGCCATTTCAACATTCATGAGCCTCCTATGAGTGTTTCAATCCCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGCTTGGTTTCTGGAATTGAAGGACAATCTCAGAGAACTAATGAACATGGAGCTGCTGAAAATGGAAGCCCTTTGAAAGTGGATGATCGTGGTAAACAAGCTACTGATGGTTCTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGCGGTGATGGGCCATGTGCGTTAGAGGTCACAGCCAACCAAGTTTCTGCCAAGGGCCGGAAAAGGAAAAGAAGTGGACAGGTAATGAATAATGATTCTTGTTCTGATCAACCCAATGGACCTCTGCAACAAGCTACTGTTTCAGCTAAGAATGATACTCAAAATCAGCCAAAAAGAGATCAAAATCCAAGCTCAAATGCTAACAAGGCTGCAGGAAAACATGGTAAGCAGGCGTCTCAACCTTCAGATCCACCAAAGGAAGAGTATATTCATGTTCGAGCTCGACGGGGCCAGGCGACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACCGGAAAGGCGGTGATGCTAGACGAAATCATTAACTATGTCCAATCGCTGCAACAACAAGTCGAGTTCTTATCGATGAAACTCGCTACCGTGAATCCAAGGATGGATATCAACATCGACAGGCTCGTAGCCAAAGATATTCTTCAATCACAAGCTGGTCCGTCGTTGACATATATGCCCACCGGTTGTCCCCCGCCTTGTGTTTCTCATCATCGACTTATTCCAAGCGGTTTTTCTGCCATAGGGAGCTCTGAGATGTTAAGGAAAATGAGTTCCCAGATGAATCCAAGGTCTAATGGATTTAAGGAGCCTTCTCAGATAAAAAGTGTGTGGGATGGTGAGCTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCTCAATTGTTTAGAACTCGAAGGATCTGATTCACCAGGCAATACAAAAGTTGCACGTTGA 1407 45.27 MDNSISCTHSMFSDMRFGETTLTSMPVAVGEPFSSTVWEQAANSQNMGTSKASGCPVSLSTDISWNLSHNMFKGGIYLPHGMLPQSLSQLPADSSFIERAARLSCFSGGNFGDIVGHFNIHEPPMSVSIPERWDEIPRNGLGLVSGIEGQSQRTNEHGAAENGSPLKVDDRGKQATDGSSANESDEAEFSGGDGPCALEVTANQVSAKGRKRKRSGQVMNNDSCSDQPNGPLQQATVSAKNDTQNQPKRDQNPSSNANKAAGKHGKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPRMDINIDRLVAKDILQSQAGPSLTYMPTGCPPPCVSHHRLIPSGFSAIGSSEMLRKMSSQMNPRSNGFKEPSQIKSVWDGELQNIVQMSFGMSTTLNCLELEGSDSPGNTKVAR 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7972133 7975336 + CmaCh04G015700.1 Cma04g01570 292651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01570 468 MobiDBLite consensus disorder prediction 143 275 - -
Cma04g01570 468 Pfam Helix-loop-helix DNA-binding domain 291 339 IPR011598 GO:0046983
Cma04g01570 468 Gene3D - 285 359 IPR036638 GO:0046983
Cma04g01570 468 MobiDBLite consensus disorder prediction 145 159 - -
Cma04g01570 468 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 466 IPR024097 GO:0006355
Cma04g01570 468 SMART finulus 294 344 IPR011598 GO:0046983
Cma04g01570 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 338 IPR011598 GO:0046983
Cma04g01570 468 MobiDBLite consensus disorder prediction 218 265 - -
Cma04g01570 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 357 IPR036638 GO:0046983
Cma04g01570 468 CDD bHLH_AtBPE_like 278 363 - -
Cma04g01570 468 PANTHER TRANSCRIPTION FACTOR BHLH49 37 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01757 Cma-Chr1:11826780 Cma04g01570 Cma-Chr4:7972133 1.72E-61 dispersed
Cma04g01570 Cma-Chr4:7972133 Cma04g02184 Cma-Chr4:15257436 2.49E-111 dispersed
Cma20g00847 Cma-Chr20:4056892 Cma04g01570 Cma-Chr4:7972133 5.33E-41 dispersed
Cma18g01076 Cma-Chr18:8899573 Cma04g01570 Cma-Chr4:7972133 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34882 PF00010 HLH 4.90E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01570 - - cmax:111488734 944.88