Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01591 ATGGCGTCCTACAGTTGCGTTCTGGTTTCGGCCATTGCAGTTTCTCCTGCCAAGACTACATGCTTCAACGGACTTAATTATCCAACATTTTCCCCTTCTTCTTCCCTTGGAAAGCCCTTTGTTAATTGTACCTTAACTTCTTCCATCATATACAGAGCAACTCCGGCCACGGCCAGCTGTGTTTACCATGATCCGATACCGGAATTTGCTGAAGTTGAAACCAGGAAATTTAAGGAGCAGTTATCGAAGAAGCTAGCGAAGGATCGCGAGACATTTGGGAACGACCTGGATTCGGTTGTGGAGGTTTGCTCAAAGATATTTAGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTAAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCACAAGAACTTCGCTTCTATGGGCTCAAAACTATCTAGATCACGATTGGAACATTTGGATCTCAAAACGAGGGCTCAAATGA 513 44.44 MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATASCVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWISKRGLK 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8046324 8047350 - CmaCh04G015910.1 Cma04g01591 292672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01591 170 PANTHER PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATED 1 166 IPR039349 GO:0010468
Cma04g01591 170 PANTHER PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-LIKE 1 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01591 - - - cpep:111778236 333.183
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01591 Cma-Chr4:8046324 Cma04g01594 Cma-Chr4:8058180 4.92E-37 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g774 . . . . . . . . Cmo04g01664 . . . . . . . Cpe01g01408 Bhi07g01713 . . Lac13g0232 Hepe10g1668 . . . . . . . . . . . . . Lsi04g00516 Csa05g02363 Chy10g00930 Cme10g00496 . . Bda07g01567 . . . . . . . . Cma04g01591 . Car04g01637 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012764 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01591 Cma_Chr04 FPKM 6.844697 7.366753 15.299203 15.52372 34.960423 28.254307 28.453716 14.197352 17.969158 16.265499