Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01592 ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTAATCTGCCAGGAGGATTCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGGTGTTCTTCCGACTTCGATTCGACGGCCTGCGTTGAGGAATCTATCGCCGTCTTCATCAAGGACGAGCGTCGCTTCGTCCCTGATTACGACTGTTTGTCACGCTTCCAATCTCCATCGCTGGATGCGGCCGCTAGACTAGACTCTGTTGCATGGATTCTTAAGGTTCAAACCTATTACGGTTTTCAGCCTTTGACAGCGTATCTCTCTGTCAACTACTTAGATCGCTTCCTTTGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGCCTGTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCCCTTTACTAGATCTTCAGGTTGAGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAGTTGTTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAGTAACGCCGTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCGGGAGATTTCATCGGGTTTCTTATTTCAAGAGCAACAGAAATTATAGTATCGAATATCCGAGAGGTAATCTTTCTGGATAACTGGCCATCGTGTATTGCGGCAGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGGGTTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGCGGCCTGAGGAAAGAAAATATCACCGGCTGCTACCGGTTAATGCAAGAGATTGTTCTTGTTAGTAGCCGGAGCAAGTCCCCCAAAATCCTACCCGGCCAGTTTAGAGTGACTGTCCGCACTAGGATGACATCCAGCGACTTATCCTCCTACTCCTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCAGCGTCTGGATAGATGATGACAAAGGTAACACCGAAGAATGA 999 48.15 MSVSISNCFSNLICQEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCLSRFQSPSLDAAARLDSVAWILKVQTYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPPLLDLQVEAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSVVNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTRMTSSDLSSYSSSSSSSSSPNKRRKLNQSSVWIDDDKGNTEE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8051224 8053625 - CmaCh04G015920.1 Cma04g01592 292673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01592 332 MobiDBLite consensus disorder prediction 318 332 - -
Cma04g01592 332 Pfam Cyclin, C-terminal domain 174 275 IPR004367 -
Cma04g01592 332 SMART Cyclin_C_2 174 309 IPR004367 -
Cma04g01592 332 MobiDBLite consensus disorder prediction 294 332 - -
Cma04g01592 332 Gene3D - 47 238 - -
Cma04g01592 332 SUPERFAMILY Cyclin-like 34 171 IPR036915 -
Cma04g01592 332 MobiDBLite consensus disorder prediction 294 317 - -
Cma04g01592 332 PANTHER CYCLIN-D1-1 25 318 - -
Cma04g01592 332 SMART cyclin_7 78 165 IPR013763 -
Cma04g01592 332 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Cma04g01592 332 CDD CYCLIN 73 164 IPR013763 -
Cma04g01592 332 PANTHER CYCLINS 25 318 IPR039361 -
Cma04g01592 332 Pfam Cyclin, N-terminal domain 43 171 IPR006671 -
Cma04g01592 332 SUPERFAMILY Cyclin-like 156 279 IPR036915 -
Cma04g01592 332 Gene3D - 56 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01592 Cma-Chr4:8051224 Cma05g00923 Cma-Chr5:7375401 3.54E-144 dispersed
Cma09g00289 Cma-Chr9:1188529 Cma04g01592 Cma-Chr4:8051224 5.02E-36 dispersed
Cma04g00298 Cma-Chr4:1480528 Cma04g01592 Cma-Chr4:8051224 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01592 K18810 - csv:101209417 551.206