Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01597 ATGATGGGAAAGGCCTCATTGGGGTGTAATTTCGAAGATCGCGAAAGTGGGTTATGTTCGGAAGGGTCTTGCATGGAGAAAAAACTTAAACTTTTTGGTTTTGAGCTGAACCCATCGGAGGAATTGGCCACAAATTGGCGCTTGAAAGGCTCGGTTGGGGAAGCCAATGAGAGCGTGAGTTCATCAACAACGGTCTCTTTCGGCGAAAGATCAGAGCAGGCCATGGCTATCAACAAGCCCAAATTCGAGTGCCAATATTGCTTCAAAGAGTTCACAAATTCGCAGGCTTTGGGAGGCCATCAAAATGCTCACAAGAAGGAGAGGTTGAAGAAGAAGAAGATGCAGCTTCAAGCCAGAAAAGCCACTCTTAGTTATTATTATCTTCACCCTTTTCAAACAGCCTCCAATAATTTCCTCTACCATTTCCCCTCCTCTTACACCCATGATGATTCTTCACTGATTAGTTTCAATCAAAACGACGCCGAATTCATCCATTTCGAGTCCTTTTTACCTCCCGAAAGACGGCTGTTCTCTTTGACACCCGCCGACAGCTCCTCCGCCGCCGCCAAACCTGTCGTTTTTCAGTCTTCTTCTTCTTCTTCTTCTCTGCCCCCTGTTGTTTCCCCTTCCTGTAAATCTTTGGATCTTCAACTTGGTCTTAATTAA 666 45.5 MMGKASLGCNFEDRESGLCSEGSCMEKKLKLFGFELNPSEELATNWRLKGSVGEANESVSSSTTVSFGERSEQAMAINKPKFECQYCFKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYYLHPFQTASNNFLYHFPSSYTHDDSSLISFNQNDAEFIHFESFLPPERRLFSLTPADSSSAAAKPVVFQSSSSSSSLPPVVSPSCKSLDLQLGLN 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8069785 8070450 - CmaCh04G015970.1 Cma04g01597 292678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01597 221 PANTHER ZINC FINGER PROTEIN 5 18 221 IPR044299 GO:0010090
Cma04g01597 221 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Cma04g01597 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Cma04g01597 221 PANTHER ZINC FINGER PROTEIN 5 18 221 - -
Cma04g01597 221 Gene3D Classic Zinc Finger 58 131 - -
Cma04g01597 221 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01597 - - - cmax:111492522 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01597 Cma-Chr4:8069785 Cma05g00902 Cma-Chr5:7118444 2.94E-21 dispersed
Cma04g00302 Cma-Chr4:1493313 Cma04g01597 Cma-Chr4:8069785 2.34E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g788 . . Bda01g02238 . Bpe13g00479 . . . Cmo04g01671 . . . . . Sed08g1992 . Cpe01g01413 Bhi07g01671 Tan04g1173 Cmetu04g1975 Lac13g0239 Hepe10g1677 . . Cla05g02510 Cam05g2694 Cec05g2728 Cco05g2762 Clacu05g2697 Cmu05g2551 Cre05g2666 . . . . Lsi04g00509 Csa05g02372 Chy10g00937 . . . . . . . Bma01g00068 Bma06g00635 . . . Cma04g01597 . Car04g01643 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002681 1 2 0 2 2 2 3 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 1 1 2 2 2 2 1 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34884 None None None None Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01597 Cma_Chr04 FPKM 4.279279 7.100598 1.23947 0.385358 0.136245 0.33972 0.131018 2.69171 2.230433 3.152549