Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01600 | ATGGCTAGAACCTCTGGTTTCTCCCGCCGGCGAAGGTCCGATCAAATCGACGCTTTAGATCGCTTCCCCATCTCTGATTCCGAGGTCCATGTTCTCGCCGTCGATGACAGCCTCGTCGACCGTACAGTAATTGAGCGTCTCCTCCGCCTCACCGCCTGCCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTCTACAATATCTCGGATTGCAAGATGAGCCTAATTCCCAAGTTGGTTTTGATGGGTTGAAGGTTGATATGATTATCACCGATTACTGCATGCCCGGAATGACAGGCTACGAATTGTTGAAGAAGATTAAGGAATCTTCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAGCGGCTCCGGGAATATATGGTGGGGGACGAAAAGATTGGAAGTGAAAGAAGTGGGAACAACAAAAGGAAGCTACGAGAACCGTGTGATGAAGCCTCATCATCGCCGTCCATTTTATCACCAGCACCATCCTCTGATTCCTCTCCATCACCGTCAGATTCGGCTCAATCCATCACCCCATCATCGTCAGAGCCATCTTCTCCGACGTCCACTCCTCAATCGGACGACTCTAAATGA | 687 | 49.64 | MARTSGFSRRRRSDQIDALDRFPISDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQDEPNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKIGSERSGNNKRKLREPCDEASSSPSILSPAPSSDSSPSPSDSAQSITPSSSEPSSPTSTPQSDDSK | 228 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8080872 | 8082147 | + | CmaCh04G016000.1 | Cma04g01600 | 292681 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01600 | 228 | Gene3D | - | 29 | 196 | - | - | |
Cma04g01600 | 228 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED | 11 | 227 | - | - | |
Cma04g01600 | 228 | MobiDBLite | consensus disorder prediction | 163 | 228 | - | - | |
Cma04g01600 | 228 | Pfam | Response regulator receiver domain | 31 | 150 | IPR001789 | GO:0000160 | |
Cma04g01600 | 228 | CDD | REC_typeA_ARR | 31 | 153 | - | - | |
Cma04g01600 | 228 | SMART | REC_2 | 29 | 154 | IPR001789 | GO:0000160 | |
Cma04g01600 | 228 | ProSiteProfiles | Response regulatory domain profile. | 30 | 158 | IPR001789 | GO:0000160 | |
Cma04g01600 | 228 | MobiDBLite | consensus disorder prediction | 163 | 180 | - | - | |
Cma04g01600 | 228 | SUPERFAMILY | CheY-like | 29 | 154 | IPR011006 | - | |
Cma04g01600 | 228 | MobiDBLite | consensus disorder prediction | 183 | 228 | - | - | |
Cma04g01600 | 228 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 11 | 227 | IPR045279 | GO:0009736 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01600 | Cma-Chr4:8080872 | Cma07g01364 | Cma-Chr7:7780371 | 5.72E-52 | dispersed | |
Cma10g00154 | Cma-Chr10:701443 | Cma04g01600 | Cma-Chr4:8080872 | 1.07E-64 | wgd | |
Cma04g00304 | Cma-Chr4:1510000 | Cma04g01600 | Cma-Chr4:8080872 | 3.61E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34885 | PF00072 | Response_reg | 2.40E-21 | CL0304 | Cma | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01600 | K14492 | - | csv:101209506 | 334.724 |