Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01600 ATGGCTAGAACCTCTGGTTTCTCCCGCCGGCGAAGGTCCGATCAAATCGACGCTTTAGATCGCTTCCCCATCTCTGATTCCGAGGTCCATGTTCTCGCCGTCGATGACAGCCTCGTCGACCGTACAGTAATTGAGCGTCTCCTCCGCCTCACCGCCTGCCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTCTACAATATCTCGGATTGCAAGATGAGCCTAATTCCCAAGTTGGTTTTGATGGGTTGAAGGTTGATATGATTATCACCGATTACTGCATGCCCGGAATGACAGGCTACGAATTGTTGAAGAAGATTAAGGAATCTTCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAGCGGCTCCGGGAATATATGGTGGGGGACGAAAAGATTGGAAGTGAAAGAAGTGGGAACAACAAAAGGAAGCTACGAGAACCGTGTGATGAAGCCTCATCATCGCCGTCCATTTTATCACCAGCACCATCCTCTGATTCCTCTCCATCACCGTCAGATTCGGCTCAATCCATCACCCCATCATCGTCAGAGCCATCTTCTCCGACGTCCACTCCTCAATCGGACGACTCTAAATGA 687 49.64 MARTSGFSRRRRSDQIDALDRFPISDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQDEPNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKIGSERSGNNKRKLREPCDEASSSPSILSPAPSSDSSPSPSDSAQSITPSSSEPSSPTSTPQSDDSK 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8080872 8082147 + CmaCh04G016000.1 Cma04g01600 292681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01600 228 Gene3D - 29 196 - -
Cma04g01600 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 11 227 - -
Cma04g01600 228 MobiDBLite consensus disorder prediction 163 228 - -
Cma04g01600 228 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160
Cma04g01600 228 CDD REC_typeA_ARR 31 153 - -
Cma04g01600 228 SMART REC_2 29 154 IPR001789 GO:0000160
Cma04g01600 228 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160
Cma04g01600 228 MobiDBLite consensus disorder prediction 163 180 - -
Cma04g01600 228 SUPERFAMILY CheY-like 29 154 IPR011006 -
Cma04g01600 228 MobiDBLite consensus disorder prediction 183 228 - -
Cma04g01600 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 227 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01600 Cma-Chr4:8080872 Cma07g01364 Cma-Chr7:7780371 5.72E-52 dispersed
Cma10g00154 Cma-Chr10:701443 Cma04g01600 Cma-Chr4:8080872 1.07E-64 wgd
Cma04g00304 Cma-Chr4:1510000 Cma04g01600 Cma-Chr4:8080872 3.61E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34885 PF00072 Response_reg 2.40E-21 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01600 K14492 - csv:101209506 334.724