Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01601 ATGCCTTTGCTGCTTCAGCTTCAGCTATGGCAGCTTCATCTCTTCCTCTTCTTCCTTTCTGTTTCTTCTGTTTGTTATTGCCAACTCACTCCCCCTCAAAATATCCAAACTTTCTACCCTTCCCCATTTATTCCTCAACCACCGTCGCCATTGTCCTCTCTTGTGCAACCGCTGCCATCGTCCTCACTTAAGCATCGGCTGCCATCGTCGTCGTCGTCGTCGTCCACGTTAACGAGGACCATAACAACGGCTGTGGCTGTCACTGCAGTGAGTACGGCTCTGATTTCCACGTTGTTCTTCTTCTTGATCCAGAGATATCTGATCAGAAGAAAACGAAATGTAGAGGTGGCAAATTCGGGTCCAGGTCCGGGTCCGGGACCGATCTTGCAGCCAGCGGTTGCTCAGAGTGAATCTTCGTGTTCTGATGGGAATCTTAAAGGGTATATTGTGGATGAAAATGGATTGGATGTGATTTATTGGAAGAGACTTGAAAGAAGGAATTCCAGTAATAGCTTTGATTGGAGTGATGGACAAGAAAATGTTATGAAAAATCGAAGCAAAAAGACGAAAGCTGTTCAAGAAGTTCCTCTGCTTCGAGGAAACTCTTCGCCGGAAGATGAAGAACCCAGTTGGATTACATCTCCTTCGCCGCCTCAGACTAACCACCCTCCGCCGTTTACTGGGAATTCTGTTCAGGCAGTTGGAAAACCATCAAGTAGTTCAATTCATTCATCAATAGAGCACTCACAATCTCTCAGGGCCGTTCCTTACGACAAAAGCTCTGTTCCAACATCGCCGCCGCCAGTTCCAGCCAAGACCAATACAAGACCACCACCGCCACCACCTCCCATCCCAGTCAAGACCAATGCAAGACTGCCCCCACTGCCTCCTATTCAAGTCCAGACCAATGCAGCACCACCACCGCCGCAGCCGCCCAATGCCGGCGCTTCAAAAGGGGGTAATTCCTCTGGCGAGGCTTCATCAGTCGAGAATGGTCAAGTTAAATTCATACCCCTGCATTGGGATAAAGTGAACACCGCAAATGCCCATCATTCTATGGTTTGGGATAAAATGAACGGCGGTTCTTTCAAATTTGATGAGGATCTTATGGAAGCTCTGTTTGGATATGTCGCAACCGACCGGAAATCCCCCGGGGCCGAGGCTAGTTCTTCAACAAACGCCTTTGGCCGGAACTCAGGGCCGTCGCAAACTTTCATTCTTGAACAGAAAAAATCTCAGAACATAGCCATTATAATCAAGTCCTTGACCATTCCTCGCAACGAAATCCTCGATGCGCTCAACGAAGGTCAAGGCCTCGAAACAGATAATCTTGAAAAACTCACAAGAATTGCTCTGACCCAAAAAGAAATTTCCCAAATTCTTGAGTATGAAGAAGACCCCCAGAAGCTTGCTGATGCTGAATCTTTCCTTTACCATCTTCTCACATCGGTTCCAACAGCCTTTACGCGTTTCAACGCCATGCTTTTCCGATTGAATTTCAGCTCCGAGATTCTCCATCTCAAGAAATCTCTACGAACTCTGGAATCTGCCTGCAAGGAGCTTAGAACTCGAGGGTTGTTTTTAAAATTGCTTGAAGCAATTCTTAAAGCTGGGAATCGGCTGAATGCAGGAACTGCAAGAGGAAATGCGAGAGCTTTCAACCTTACAGCTCTCCGGAAGCTCTCTGATGTTCAAAGCACTGATGGGAAAACCACTTTGCTTCACTTTGTGGTGAAAGAAGTCATCAGAACAGAAGGCAAAAAGTGTGTTTTAAACAGGAACAAGAGTATGAGCCGTAACAACAGCAGCAATAGCAGTGAGAACAGCTTTAGCAGCCACGAAAATTCGACTTCGAAAGAGGACGCAGTAAAGGAATATATGATGTTGGGACTGCCAGTGGTGGGAGGTCTAAGCGCTGAGTTCTCTAATGTAAGGAAAGCGGCGGCAATCGACTACGAGAGTGTTGCCAAGGCTGCGTCATCTCTTACTAGCCCAACTCTAGAAATCCGGCAGCTTTTGAATCAAATTGGGAACAATGGAGGAGGGTTTACAAAGGAAATGAGAGGGTTTCTTGAGGCAGCAGAGGATGAGCTGAAGGTGGTGAGAGAAGAACAGACGAGAGCGATGGAGCTAGTGATGAAGACAACAGAGTATTATCAGGCTCAAAGTTCAAAAGATAAAGAAGCAAATAGGCTTCAATTATTCATCATAGTGAAAGATTTCCTAGAAATGGTAGATCGGGTGTGTGTTGAAATTGCCCGAGAACTCCAGAGGAGATCGTTGGCCGTCGATGTGGGTTCGCCACAGGTGAGATCAAAGACTGTCTTCCCTACCTTGCCGGAAAATTTTATGTCGGACAAGTCCAAAGGCAGTTCTAGTGATTCAGATGAGGAATTCTGA 2400 46.62 MPLLLQLQLWQLHLFLFFLSVSSVCYCQLTPPQNIQTFYPSPFIPQPPSPLSSLVQPLPSSSLKHRLPSSSSSSSTLTRTITTAVAVTAVSTALISTLFFFLIQRYLIRRKRNVEVANSGPGPGPGPILQPAVAQSESSCSDGNLKGYIVDENGLDVIYWKRLERRNSSNSFDWSDGQENVMKNRSKKTKAVQEVPLLRGNSSPEDEEPSWITSPSPPQTNHPPPFTGNSVQAVGKPSSSSIHSSIEHSQSLRAVPYDKSSVPTSPPPVPAKTNTRPPPPPPPIPVKTNARLPPLPPIQVQTNAAPPPPQPPNAGASKGGNSSGEASSVENGQVKFIPLHWDKVNTANAHHSMVWDKMNGGSFKFDEDLMEALFGYVATDRKSPGAEASSSTNAFGRNSGPSQTFILEQKKSQNIAIIIKSLTIPRNEILDALNEGQGLETDNLEKLTRIALTQKEISQILEYEEDPQKLADAESFLYHLLTSVPTAFTRFNAMLFRLNFSSEILHLKKSLRTLESACKELRTRGLFLKLLEAILKAGNRLNAGTARGNARAFNLTALRKLSDVQSTDGKTTLLHFVVKEVIRTEGKKCVLNRNKSMSRNNSSNSSENSFSSHENSTSKEDAVKEYMMLGLPVVGGLSAEFSNVRKAAAIDYESVAKAASSLTSPTLEIRQLLNQIGNNGGGFTKEMRGFLEAAEDELKVVREEQTRAMELVMKTTEYYQAQSSKDKEANRLQLFIIVKDFLEMVDRVCVEIARELQRRSLAVDVGSPQVRSKTVFPTLPENFMSDKSKGSSSDSDEEF 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8084704 8087187 + CmaCh04G016010.1 Cma04g01601 292682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01601 799 SUPERFAMILY Formin homology 2 domain (FH2 domain) 278 758 - -
Cma04g01601 799 MobiDBLite consensus disorder prediction 261 292 - -
Cma04g01601 799 MobiDBLite consensus disorder prediction 299 314 - -
Cma04g01601 799 Coils Coil 504 524 - -
Cma04g01601 799 MobiDBLite consensus disorder prediction 225 258 - -
Cma04g01601 799 PANTHER FORMIN-LIKE PROTEIN 4 10 795 - -
Cma04g01601 799 SMART it6_source 326 760 IPR015425 -
Cma04g01601 799 PANTHER FORMIN-RELATED 10 795 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma04g01601 799 Gene3D Formin, FH2 domain 346 764 IPR042201 -
Cma04g01601 799 Coils Coil 691 711 - -
Cma04g01601 799 MobiDBLite consensus disorder prediction 592 617 - -
Cma04g01601 799 MobiDBLite consensus disorder prediction 593 616 - -
Cma04g01601 799 ProSiteProfiles Formin homology-2 (FH2) domain profile. 326 771 IPR015425 -
Cma04g01601 799 Pfam Formin Homology 2 Domain 329 746 IPR015425 -
Cma04g01601 799 MobiDBLite consensus disorder prediction 169 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01601 - - - mcha:111019114 917.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01601 Cma-Chr4:8084704 Cma05g00928 Cma-Chr5:7504702 6.89E-122 dispersed
Cma04g00306 Cma-Chr4:1513635 Cma04g01601 Cma-Chr4:8084704 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007048 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01601 Cma_Chr04 FPKM 0.178333 0.0 0.22826 0.0 0.296749 0.327213 0.431639 0.0 0.0 0.0