Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01605 ATGGATTGGGAACAGCAGCAGCGTCGGAAGAGGAAGCGTTTTGGCAGGTCGAGCTCGCACGCTCAGTTTTTGACTCGAAGATCTCTGTTTCTTTGCCTTGCCTTTTTTGCTTTTCTCTTGTTTCTCTCTTCAAGTCGGTGGTTCTCGATTGCGGCGGCGTCCTTCCGGCCAGTTCTCGATGTCTCTTCCACCACTCTCTCCCGCTTGTCCACCTCTGCCAGCAAGTCTACACTTGACAATTCTTTGAGCGGTAAGTATTCGCCTTTGAGAATCGAAAGACGAGTCCTTTTCCCAGACCACTTGCTTTTGATGGTCACTGGCGAATTCAGCCGAGATGAGAAATTGGTTTGTTTATACCACAAATCTGTCGCTAGAGGTTTGAAACAAGAGACTCTCGAACAGTCAGTTCTGTCCACGGACAGGTACGATGAGTTCCGATCAATTGCCAGATGTCCACTGCCACCACGGAATTATTCGGCCTCCGCCGTGGACTTGAGGTGGGTTGGCGTGGAAGCCGATGACCATTGGTTGGTCAGAAATAGGCATCCAGTTGCCTCGTGGGAGAGGGTGGTTTATGAGGCAGCTATTGACGGTGATACGGTTGTGGTGTTTGCCAAGGGACTAAATCTCCGACCACACAAAGAATCAAATCCGACTGAATTCAGCTGCCACTTTAGACTGAGAAATTCCAACGATAACGGAGACTATGTGCTTACCACAAAGGCAGTAACTGCAGCTCAAGAAATTATCAGGTGCTCCTTGCCGGCTGGTGTGTCGAGCACTTTAGACAAGGAAAAGGGAATTCGGGTTACTGTGGGCCGTGGCAGTGTCAATACGAAAGCCCACCTTCAGGTGACTCTGCCCTCAGTGGCCAGACTCTCCAACTCCAAGCTGAATGAACTGCAAAGAAATCAAGAAAAACATGAGCTTTGTGTGTGCACAATGGTGTGGAATCAAGCAGCAGCACTTCGTGAGTGGATTATGTACCACGCTTGGCTTGGAGTAGGGCGCTGGTTTATCTACGACAACAATAGTTATGATGACATTGAAGAAGTCGTCAGAGAGCTCAACCTGGAAAACTACAATATCAGTAGGCTGACCTGGCCATGGATTAAAACCCAAGAAGCAGGTTTCTCACACTGTGCTTTGAGAGCTAGAGATGAATGCAAGTGGGTCGGTTTCTTTGATGTTGATGAGTTTTTCTACTTTCCTTCAAAGTATCGCCGTCAGCAAGAATACCATACTGCCGGCCGCAATGCCCTTCATTCTCTCATTGCTAACTCATCTGCTTCAACCTCCAATTCAACTACCATTGCAGAGATTAGAACGGCCTGCCATAGCTTCGGACCATCGGGTTTAACATCATATCCACCGCAGGGGGTGACACTGGGGTACACTTGCCGGCTCCAGAGTCCCGAGAGGCACAAATCGTTTGTCCGGCCAGACTTGCTTGATCCAACACTTCTCAATGTCGTTCATCACTTTAGGTTGAAACGAGGATCTGGGTTTTTTGACGTACCAAAAAGCAATGCTGTCATAAACCATTACAAGTATCAAGTGTGGGAAACTTTTAGAGCTAAATTTTTCAGAAGAGTAGCTACCTATGTTGTTGACTGGCAGGAGGCACAGAATGAAGGATCGAAGGATAGAGCACCTGGGCTTGGGACAGAGGCAATCGAACCACCCAATTGGAGGTTACAGTTCTGTGAAGTTTGGGACACCGGACTGCGAGACTTTGTCCAGACTTTGTTCTCTGATCCTTTGACAGGATACCTACCGTGGGAAAAAGCTTCTGGTTAA 1800 48.11 MDWEQQQRRKRKRFGRSSSHAQFLTRRSLFLCLAFFAFLLFLSSSRWFSIAAASFRPVLDVSSTTLSRLSTSASKSTLDNSLSGKYSPLRIERRVLFPDHLLLMVTGEFSRDEKLVCLYHKSVARGLKQETLEQSVLSTDRYDEFRSIARCPLPPRNYSASAVDLRWVGVEADDHWLVRNRHPVASWERVVYEAAIDGDTVVVFAKGLNLRPHKESNPTEFSCHFRLRNSNDNGDYVLTTKAVTAAQEIIRCSLPAGVSSTLDKEKGIRVTVGRGSVNTKAHLQVTLPSVARLSNSKLNELQRNQEKHELCVCTMVWNQAAALREWIMYHAWLGVGRWFIYDNNSYDDIEEVVRELNLENYNISRLTWPWIKTQEAGFSHCALRARDECKWVGFFDVDEFFYFPSKYRRQQEYHTAGRNALHSLIANSSASTSNSTTIAEIRTACHSFGPSGLTSYPPQGVTLGYTCRLQSPERHKSFVRPDLLDPTLLNVVHHFRLKRGSGFFDVPKSNAVINHYKYQVWETFRAKFFRRVATYVVDWQEAQNEGSKDRAPGLGTEAIEPPNWRLQFCEVWDTGLRDFVQTLFSDPLTGYLPWEKASG 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8110280 8112079 + CmaCh04G016050.1 Cma04g01605 292686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01605 599 PANTHER GLYCOSYLTRANSFERASE FAMILY 92 PROTEIN RCOM_0530710 6 597 - -
Cma04g01605 599 Pfam Glycosyltransferase family 92 307 561 IPR008166 -
Cma04g01605 599 SUPERFAMILY Nucleotide-diphospho-sugar transferases 308 412 IPR029044 -
Cma04g01605 599 PANTHER UNCHARACTERIZED 6 597 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01605 - - - cmax:111482980 1166.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01605 Cma-Chr4:8110280 Cma04g02948 Cma-Chr4:19415614 4.33E-146 dispersed
Cma04g00312 Cma-Chr4:1544033 Cma04g01605 Cma-Chr4:8110280 0 wgd
Cma04g01605 Cma-Chr4:8110280 Cma05g00971 Cma-Chr5:7845723 9.09E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g804 . . . . . . . . Cmo04g01685 . . . . . Sed08g1846 . Cpe01g01421 Bhi07g01654 Tan04g1160 Cmetu03g0226 Lac13g0249 . . . Cla05g02502 Cam05g2686 Cec05g2719 Cco05g2754 Clacu05g2689 Cmu05g2543 Cre05g2658 Cone13ag1004 Cone19ag0998 . . Lsi04g00501 Csa05g02383 Chy10g00947 Cme10g00479 . . . . Bpe11g01748 . . . . . . Cma04g01605 . Car04g01647 Car15g00317 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008683 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01605 Cma_Chr04 FPKM 6.429565 7.294446 13.534719 14.645031 4.924237 5.103856 4.664216 17.253922 14.887008 14.538578