Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01608 ATGAACGCCCCTCGCACGTGTTCGCTTTGTGGCAACAATGGCCATAACTCCCGCACGTGTCCGGAGGGAGACGGTGGCGGTGGCGGCGGATTCATGTTGTTCGGGGTCAGGCTGACCACGACGGAGGGAAGTAGCTCGTTTAGAAAGAGTGTTAGTATGAATAATCTGTCCCAGTTCGACCAGCCTCTAAGTCAGGACTCCAACAACGCCGATGCAGGATATGCTTCCGACGACGTCGTTCACCCATCCGACCGTTGCCGCGGCCGAAAAAGAGGGATTCCGTGGACAGAGGAAGAACATCGGCTGTTCTTGTTGGGATTACAGAAGGTTGGGAAAGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACACGTACGCCGACTCAGGTGGCTAGTCATGCTCAGAAATACTTCCTCCGCCGGAATAATTTCAATCGGAGACGCCGTAGATCCAGCCTTTTCGATATCACCACTGACACTTTCACGAGCTCATCCATGGAAGACGATTTGGTATTTTCCGGCCACGAGGCTCTGCAGCCACCGCTGCCACCATCGCAGCTGCTAAAAGACAGCAAACCCGGAAATTTCCTACTTAAAATTCATCCAGTGAAACCACCTCCTGCCGCCGGCGATGACAGCAACGCCGAGAACACAATCAGTTCCAAAATCCTTCGTCCAATACCAATGCTTCCTCTGTCTCCATACCCAAAATTCGCTCAATTAAACATTAACGACAGAACGCCGGAAGACCCTTTGCCTCTGACTTTGAAGCTCTCTACTTCACACCCGGAGGCACAGTCTCCGACAGCGGCTTCACAGTCGTCAGGCAATTTCCAGACAATGTCCGGCGGCGGAGACAGTATCGACATTGTCAGTGTTGCTTGA 888 52.36 MNAPRTCSLCGNNGHNSRTCPEGDGGGGGGFMLFGVRLTTTEGSSSFRKSVSMNNLSQFDQPLSQDSNNADAGYASDDVVHPSDRCRGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITTDTFTSSSMEDDLVFSGHEALQPPLPPSQLLKDSKPGNFLLKIHPVKPPPAAGDDSNAENTISSKILRPIPMLPLSPYPKFAQLNINDRTPEDPLPLTLKLSTSHPEAQSPTAASQSSGNFQTMSGGGDSIDIVSVA 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8119664 8121323 + CmaCh04G016080.1 Cma04g01608 292689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01608 295 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 32 295 - -
Cma04g01608 295 CDD SANT 94 138 IPR001005 -
Cma04g01608 295 ProSiteProfiles Zinc finger CCHC-type profile. 7 22 IPR001878 GO:0003676|GO:0008270
Cma04g01608 295 SUPERFAMILY Homeodomain-like 88 144 IPR009057 -
Cma04g01608 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Cma04g01608 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Cma04g01608 295 MobiDBLite consensus disorder prediction 58 81 - -
Cma04g01608 295 Gene3D - 93 145 - -
Cma04g01608 295 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Cma04g01608 295 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Cma04g01608 295 MobiDBLite consensus disorder prediction 260 287 - -
Cma04g01608 295 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Cma04g01608 295 SMART sant 91 141 IPR001005 -
Cma04g01608 295 PANTHER KIN2 32 295 - -
Cma04g01608 295 MobiDBLite consensus disorder prediction 243 295 - -
Cma04g01608 295 MobiDBLite consensus disorder prediction 58 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01608 - - - csv:101207806 437.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01608 Cma-Chr4:8119664 Cma08g00737 Cma-Chr8:4425168 4.14E-57 dispersed
Cma10g00160 Cma-Chr10:725322 Cma04g01608 Cma-Chr4:8119664 7.18E-47 wgd
Cma11g00180 Cma-Chr11:935372 Cma04g01608 Cma-Chr4:8119664 3.56E-47 wgd
Cma18g00141 Cma-Chr18:708562 Cma04g01608 Cma-Chr4:8119664 8.74E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34887 PF00249 Myb_DNA-binding 1.60E-10 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01608 Cma_Chr04 FPKM 14.995337 16.169027 12.736171 13.920077 20.433655 17.89456 20.937386 2.70396 3.243678 2.283421