Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01611 ATGACGGAGAGGACCTCCTCTTCTAACACGGTTCGACTTGGCCGAGTCCAGCCGCAGGCTCCTGGACATCGTACCATCTTCTGTAATGATCGCGACGCTAATCTCCTTGTCAAATTCAAGGGGAATTCGGTCTCGACGACGAAGTACAACTTCTTCACCTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACCATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTTCTTGTCTCTCTCATTAAAGAAGCATTCGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTCATAGATGTGCTACAAGATCAAAAGTGGGAGAGTGTTCCTTGGAAAAGGTTGCAGGTTGGGGACATTGTTAGGGTTCGGCAAGATGGATATTTTCCTGCGGATATTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACCTGGATGGGGAGACAAATTTGAAGATTAGGAAGGCCCTGGAAAAGACGTGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATAATTCAGAACCAAACGTTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAGTATATAGTTGGGGCTGTTGTTTTTACTGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGGAGTACCCTAGAAAAGAAACTTGACAAACTTATACTTACACTATTTGCTACTCTCTTTATGATGTGTTTGATTGGAGCCATTGGCAGTGGCGTGTTTGTAAACCAAAAGTACTACTACCTAGCTCTTGATAAGGGAGGGGAAAACCAATTCAACCCTCGCAATCGATTCCTGGTTGTTGTTTTGACCATGTTTACTCTGATTACTCTGTACTCGACAATTATTCCTATTTCTCTATATGTTTCCATTGAGATGATCAAATTTATTCAATCAACACAATATATCAACAAGGATCTGAATATGTTCCATGCTGATAGCAATACCCCTGCACTGGCTAGAACTTCTAATCTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACTAGGAATCTAATGGAGTTCTTTAAGTGTTCAATTGGTGGAGAGGTTTATGGCACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGTGCACAAATCAGCAAATGCTGTACAAGAAAAGGGATTTAACTTCGATGATGCTAGGCTTATGAGAGGAGCATGGAGAAATGAACCCAACTCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGTCATACTGTACTCCCTGAGGGAGACGAATCCCCAGAAAAGATCATTTATCAAGCTGCATCACCTGATGAGGCTGCCTTAGTAACTGCGGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGCACACCTACTACAATATATGTTCGAGAATCTCATGTTGAGAAGATGGGAAAAATCCAAGATGTTTCGTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTTGTGTGTCGTTATTCTGATGGTAGGCTTGTCTTGTACTGCAAGGGTGCTGATACCGTAGTATATGAGAGATTGGCTGGTGGAAATGATGATTTGAAGAATGTAACTAGGAAACACTTGGAGAAATTTGGATCTTCCGGTTTGAGAACCCTATGCCTTGCTTACAGAGATTTGCATCCTGACGTGTATGAAAGCTGGAATGAGAAGTTCATTCAAGTTAAGTCTTCATTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGACCTTATTTTGATTGGCTGTACTGCTATAGAAGATAAACTTCAAGAAGGAGTACCAAACTGTATACAGACGCTTTCTCGAGCTGGTATCAAGATTTGGGTGCTAACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCGTGCAATTTAATAAACAATGAAATGAAGCAATTTATTATCAGTTCAGAAACGGATGCAATCCGAGAAGTTGAAAACAGGGGTGACCAAGTAGAACTTGCACGTTTTACTAGAGAAGAAGTAAAAAGGGAACTGAAACATTGTCTTGAGGAAGCGCAGCGGTGTTTACAATCTGTGTCTCCACCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAGCTTGAGCTTGAATTGTAGTTCAGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTCAGTATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCATCTCACGTGGGCGTTGGAATAAGTGGACAGGAGGGAATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCTCAGTTTCGCTTTCTCACAGATTTACTTCTTGTACATGGGCGATGGTCATATCTTAGAATATGCAAGGTCGTCACGTACTTCTTTTACAAGAATCTTACTTTCACTTTAACTCAGTTTTGGTTCACCTTCCAAACCGGATTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCGTTGTATAATGTCATATTTACCGCCCTACCTGTAATAATTGTTGGACTATTTGACAAGGATGTCAGTGCTTCCCTATCCAAAAAGTACCCTGAGCTCTACAGAGAGGGAATAAGAAATGCATTTTTTAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTTTAGTCTTTTATTTTTTTATAACCGTTTCTAGTTCCAGCAGTCAATCGTCATCTGGCAGGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACATGCATTGTAGTGACTGTGAATTTGCGTCTGCTTATGATCTGCAATTCAATTACCCGGTGGCATTACATTACGGTTGGGGGAAGCATTTTAGCTTGGTTCCTATTTATTTTCTTATATTCTGGTATTATCACACCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGTACATTATACTTTTATGTAGCTGTTCTTCTTGTCCCCATTGTTGCACTTCTCTGTGATTTCGCGTACCAAGGCATTCAGAGATGGTTTTTCCCTTACGATTATCAGATAGTACAAGAAATACATAGACATGAACCTGAAGGCAGAGGTACGGCAGGATTGCTGGAGATTCAGAACCATCTTACACCGGAGGAGGCAAGAAGTTATGCCATGTCTCAACTCCCTCGAGAATTATCGAAGCACACTGGCTTTGCTTTCGACTCACCTGGCTACGAGTCATTTTTTGCCGCACAGCTTGGTATTTATGCCCCACAGAAAGCATGGGATGTTGCTAAGAGAGCCAGTGTGAAATTGAGGCCAAAGAATAGGGAAAAAAAGCTTGGAGCTGTGGCGGTGGGGCTGTTTCTAGGGATTTTAACCGTCGGCTCGCCACCACCGGGGAAAACAACAAGCTGGCCCTGGCCAGCAGCTGGGTCTGAGGTTGAGGGAAGAAGCCCTGTCATGAAGCAGCTGACTCAAATTCTATTGTTCTCTGAGAATGGAGAGATCGCTGCGTTGGTGACCGGGTTTCTTCGAGACGATCTTTAA 3828 41.69 MTERTSSSNTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLIDVLQDQKWESVPWKRLQVGDIVRVRQDGYFPADILFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQNQTLPLSPNQLLLRGCSLRNTEYIVGAVVFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFMMCLIGAIGSGVFVNQKYYYLALDKGGENQFNPRNRFLVVVLTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGTGITEIERGIAEQNGLKVEEVHKSANAVQEKGFNFDDARLMRGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKIIYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIQDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVVYERLAGGNDDLKNVTRKHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQVKSSLRDREKKLDEVAELIEKDLILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFTREEVKRELKHCLEEAQRCLQSVSPPKLALVIDGKCLMYALDPSLRVTLLSLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQASHVGVGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIRNAFFKWRVVTTWAFFSIYQSLVFYFFITVSSSSSQSSSGRVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFLFIFLYSGIITPHDRQENVYFVIYVLMSTLYFYVAVLLVPIVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRGTAGLLEIQNHLTPEEARSYAMSQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVAKRASVKLRPKNREKKLGAVAVGLFLGILTVGSPPPGKTTSWPWPAAGSEVEGRSPVMKQLTQILLFSENGEIAALVTGFLRDDL 1275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8128274 8144426 - CmaCh04G016110.1 Cma04g01611 292692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01611 1275 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 807 913 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma04g01611 1275 Pfam E1-E2 ATPase 124 355 - -
Cma04g01611 1275 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 7 1199 - -
Cma04g01611 1275 CDD P-type_ATPase_APLT_Dnf-like 41 993 - -
Cma04g01611 1275 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 467 673 IPR023299 GO:0000166
Cma04g01611 1275 Pfam Cation transport ATPase (P-type) 503 594 - -
Cma04g01611 1275 PRINTS P-type cation-transporting ATPase superfamily signature 834 853 - -
Cma04g01611 1275 PRINTS P-type cation-transporting ATPase superfamily signature 402 416 - -
Cma04g01611 1275 Pfam Phospholipid-translocating P-type ATPase C-terminal 862 1112 IPR032630 -
Cma04g01611 1275 SFLD p-type atpase 384 885 IPR044492 -
Cma04g01611 1275 SUPERFAMILY Calcium ATPase, transmembrane domain M 34 1112 IPR023298 -
Cma04g01611 1275 SFLD Haloacid Dehalogenase 384 885 - -
Cma04g01611 1275 ProSitePatterns E1-E2 ATPases phosphorylation site. 404 410 IPR018303 -
Cma04g01611 1275 SUPERFAMILY Calcium ATPase, transduction domain A 122 265 IPR008250 -
Cma04g01611 1275 Gene3D - 104 269 - -
Cma04g01611 1275 Gene3D - 513 667 IPR023299 GO:0000166
Cma04g01611 1275 Pfam Phospholipid-translocating ATPase N-terminal 26 90 IPR032631 -
Cma04g01611 1275 Gene3D - 668 874 IPR023214 -
Cma04g01611 1275 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 7 1199 - -
Cma04g01611 1275 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 39 1120 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma04g01611 1275 SUPERFAMILY HAD-like 397 890 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01611 Cma-Chr4:8128274 Cma13g01049 Cma-Chr13:7987560 0 dispersed
Cma04g00317 Cma-Chr4:1554381 Cma04g01611 Cma-Chr4:8128274 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01611 K14802 - csv:101207069 2309.26