Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01613 ATGGGTGCCTGCGTTTCCACGCCGGAGGGCTGTGTCAGAGCCAAATTTAAGAAGTCTTCCAGGAGGAAGAACCGCCGGAGAAGGAGGAAAGCTTCCAAAACGACGGCAATTTCTACCCTCTCCGATGGATCGCGCCGCTCCAATCCGATTGACCACCGCTCCTTTTCCAATCCCACTTTTCAAGCTGGAAGTTCTGATGAGGCCTGGTTTGATACAGTTGCAAAATTTGAATCGGATTGTGACGAAGACTACCAAAGTGTTCCTGATGACATACAGTCAATTAATAGCTTTGAAGGTACATCAACGTCAAGCGTTTCGTCTTCTGGAGATGCTAATCATGGAGATCTTAATGTGAATCGACATAGCGCGACCATCGATCAGATTCATAGACCAGGAAATTCAGGAAGAGTACATTCTGTGAGTCAAGTTGCAAGGGATTCACATTCTCAGGCCATGAATCCAGATGATGCAGAACCCCAACTTAAGGGTTATGGACGCTCGAGCAAGGCGAACGAACCGGTATTCGTCGACGAGATCTCCTCCACTGCTGGTGAAAGCTCTGCCAAAGACGTTGGAATATTGGATAATTGTGGGATTTTACCAAGCAACTGCTTGCCTTGTCTTGCATCAACAATGAACTCTGTTGAAAAGAGAAAATCACCAAGTTCTAGTCCTCCAAGTGGACTGAAAAAGGCAGCCTTGAAACTGTCGTTCAAGTGGAAAGAAGGAAACCCCAATGCTGCTTTATTTTCGTCGAAAGCGCTTCTACGAAGACCTATAGCAGGTTCTCAAGTACCCTTTTGCCCAGCTGAAAAGAAAATGCTAGATTGTTGGTCACATATTGAGCCAGATAGTTTTAAAGTTCGGGGAGTAAACTATGCAAAGGACAAGAAGAAAGAGTTTGCTCCCAGTCATGCTGCTTACTGTCCATTTGGAGTTGATGTGTTCTTGTCCCATCGGAAAGTGGATCACATCGCTCGATTTGTCGAACTTCCTGTGGCTAATTATTCTGGAAAACTTCCACCTATCCTTGTCGTGAATGTTCAGATTCCATTGTATCCTGCAGCAATTTTTCATGGAGATACCGATGGAGAAGGGATGAGTATCGTCTTGTACTTTAAGCTTTCTGATGCATATGCCAAGGAACTTTCATCTCATTTTCAAGAAAATATCAGGAAGATGATTGATGATGAAGTTGAAAAGGTGAAGGGTTTTCCAGTAGACACTGTAGTACCCTTTAGGGAAAGATTGAAAATTTTGGGGCGAGTTGCAAACGTGGAGGATCTTTCAATGAGCACTGCACAGCGGAAGCTTATGCAGGCTTACAATGAAAAGCCCGTCCTCTCGCGTCCCCAACATGAATTTTACTCGGGAGAAAACTACTTGGAAATCGACTTGGATATGCACAGATTTAGTTACATATCAAGGAAAGGTTTTGAAGCGTTTCTTGATAGACTCAAGTGCTGCATTTTGGATGTTGGCCTCACAATTCAGGCAAGTTTCTTGTAA 1509 44.14 MGACVSTPEGCVRAKFKKSSRRKNRRRRRKASKTTAISTLSDGSRRSNPIDHRSFSNPTFQAGSSDEAWFDTVAKFESDCDEDYQSVPDDIQSINSFEGTSTSSVSSSGDANHGDLNVNRHSATIDQIHRPGNSGRVHSVSQVARDSHSQAMNPDDAEPQLKGYGRSSKANEPVFVDEISSTAGESSAKDVGILDNCGILPSNCLPCLASTMNSVEKRKSPSSSPPSGLKKAALKLSFKWKEGNPNAALFSSKALLRRPIAGSQVPFCPAEKKMLDCWSHIEPDSFKVRGVNYAKDKKKEFAPSHAAYCPFGVDVFLSHRKVDHIARFVELPVANYSGKLPPILVVNVQIPLYPAAIFHGDTDGEGMSIVLYFKLSDAYAKELSSHFQENIRKMIDDEVEKVKGFPVDTVVPFRERLKILGRVANVEDLSMSTAQRKLMQAYNEKPVLSRPQHEFYSGENYLEIDLDMHRFSYISRKGFEAFLDRLKCCILDVGLTIQASFL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8147520 8152020 + CmaCh04G016130.1 Cma04g01613 292694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01613 502 PANTHER CW14 PROTEIN 1 499 - -
Cma04g01613 502 MobiDBLite consensus disorder prediction 16 33 - -
Cma04g01613 502 PANTHER - 1 499 - -
Cma04g01613 502 MobiDBLite consensus disorder prediction 92 149 - -
Cma04g01613 502 MobiDBLite consensus disorder prediction 15 63 - -
Cma04g01613 502 MobiDBLite consensus disorder prediction 34 63 - -
Cma04g01613 502 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 278 499 IPR009769 -
Cma04g01613 502 MobiDBLite consensus disorder prediction 92 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01613 - - - csv:101206832 836.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01613 Cma-Chr4:8147520 Cma04g02744 Cma-Chr4:18447604 1.04E-149 dispersed
Cma15g00293 Cma-Chr15:1376962 Cma04g01613 Cma-Chr4:8147520 5.24E-157 wgd
Cma04g00318 Cma-Chr4:1574020 Cma04g01613 Cma-Chr4:8147520 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g817 . . . . . . Bma14g01758 . . . . . . . Sed06g1586 . Cpe01g01427 Bhi07g01643 Tan04g1149 Cmetu10g1826 Lac13g0255 Hepe10g1694 . . Cla05g02494 Cam05g2679 Cec05g2713 Cco05g2748 Clacu05g2681 Cmu05g2536 Cre05g2651 Cone13ag0994 . . . . Csa05g02391 Chy10g00953 . . Blo11g00893 . . . . . . . Cmo04g02874 . Cma04g01613 . Car04g01654 . Cpe13g00933 . . . . . . . . . . . . . . . . . Chy09g00284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007653 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01613 Cma_Chr04 FPKM 5.688193 5.539256 4.363849 4.107523 8.476392 7.358895 8.510956 3.176565 2.6572 2.675324