Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01617 ATGCCTTCTCCCTCTTCCTCTCTTACTCTTCTCGCCGTTCTTCTGTCCTTCATTCACCTCGTCCAATCTCTGACCTCTTCTTGTCCGCCTTTCTCTTCCAAACCCCTTTTCCCCTTCTCCTCTCTTCCGGGTCACGGCCATCCTTCCTTCCACCTGCGTTGCTCTTCTCCCCACTCTCTTCTCTCCGTTAATGGCCTTTCCTTTTCTCTCTTGAGTTTCAATGCCACCTCCTCCACTCTCCTCCTTTCCCCTCTTCCCCTCACTCTCAACGAATCCACCCACACCTGCTTTTCTCCTCGTTTCTCCTTTATTCCCACCCGTTCCATTAACTTCTCCGCCTCCCCCTTTCGAATCTCTGATGGGTATTGTTCTAGGCTCTCTGTTCTTCGCCCCTGTTCGCCTCCGCATCTACCCAATTGCAGCCATTGCCCTTGGGACTGCAATCTTATCAAGACACCACTTCATTTGCTCCATGGATGCGGCGTCGAGCGTCAGTCCGTCTCGAAGCAAGGTTGTCAGGGTGAGGTGTTGGAGTATTTGGATCGAATTCTTAGATTGGGGATTGAAGTCGAGTGGGATACAGATCAGGACCCTTATTTTGTCAAGTGTAAAGATTGTGAAGCTAGAAATGGTGATTGTGGATTCAATTCCTCTGACCCAGATAGGCACTTCATTTGCTATCATACTCAAACCCGATACTCATTTCCCAATAGAATCGCGATTTTGTTCTCTGTTTTTGCGTTGATCTGCTTGTTTTTGGTTATTGCGGTGACCACGGTTTTTTTAAGGTCCAGATGGTTGAGATCCCTTGCTAGTGAAGTAGACCCCACAGCCCTGTTCCTCAGCCGTCATCGTTCACCTAATCTTCTCCCACCAGTTTTTCCCTACGAAGAGCTCGAGTCCTCAACTAATCGGTTCGACCCCAAGAGGAAACTGGGCGATGGTGGATTTGGGTCTGTTTATTTGGGTCAGCTTAACGATGGCCGATTAGTGGCTGTCAAGTATCTTCACAAGCACCACGGCGCCGTCGCCACCGCCCCCTCCGGCAGGGCTTTCTTCACCAAGTCGTTCTGTAACGAAATCTTGATTCTTTCTTCAATTAATCACCCGAATCTCGTTAGGTTACATGGGTATTGTAGTGACCCAAGAGGGCTTATTCTTGTCTATGATTATGTCCCAAATGGGACACTCGCCGACCATCTCCATGGCGCAAAGAGCTCGTATCGTAAGGGATCTCTGACTTGGCAAGTGAGGATTGACATTGCCCTGCAAATCGCCATGGCTATGGAGTATTTGCATTTCTCTGTGGCGCCGCCGATTGTTCACAGAGACATTACCTCTTCCAATATTTTCGTGGAGATCGATATGAGAATCAAGGTTGGGGATTTTGGGCTTTCAAGGCTGCTGGTTTTCTCAGATACGACGTCGTCGTCTTCATCTGGGTATGTCTGCACTGGTCCTCAGGGGACACCTGGTTACTTGGATCCGGATTACCACCGGTCCTTCCGGTTGACGGAGAAAAGTGACGTGTACAGCTTCGGAGTGGTGTTACTGGAGCTAATTTCTGGTTTAAAAGCGGTGGATCAGAGTCGGGAGAGAAGAGAAATGGCGCTGGCGGATCTTGTAGTGTCCAAGATCCAAATGGGTCAGCTTCATCAGGTGGTGGACTCCGTTTTAGGCATCGACGGCGAGGTTATCGGCGGCGTTGAAGCGGTGGCAGAGCTAGCGTTTCGATGCGTGGCGGCGGACAAGGACGACCGACCCGACGCCAAGGAGATCGTTGAAGAGCTCCGGCGAATTCGGAACCGCACACGTGGAGGTGACCGGTCGTCGATTTCAAACGTGGGTGATGACGTGGATATACGTTGA 1869 50.45 MPSPSSSLTLLAVLLSFIHLVQSLTSSCPPFSSKPLFPFSSLPGHGHPSFHLRCSSPHSLLSVNGLSFSLLSFNATSSTLLLSPLPLTLNESTHTCFSPRFSFIPTRSINFSASPFRISDGYCSRLSVLRPCSPPHLPNCSHCPWDCNLIKTPLHLLHGCGVERQSVSKQGCQGEVLEYLDRILRLGIEVEWDTDQDPYFVKCKDCEARNGDCGFNSSDPDRHFICYHTQTRYSFPNRIAILFSVFALICLFLVIAVTTVFLRSRWLRSLASEVDPTALFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHGAVATAPSGRAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGAKSSYRKGSLTWQVRIDIALQIAMAMEYLHFSVAPPIVHRDITSSNIFVEIDMRIKVGDFGLSRLLVFSDTTSSSSSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSVLGIDGEVIGGVEAVAELAFRCVAADKDDRPDAKEIVEELRRIRNRTRGGDRSSISNVGDDVDIR 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8165758 8167626 - CmaCh04G016170.1 Cma04g01617 292698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01617 622 Gene3D Phosphorylase Kinase; domain 1 283 391 - -
Cma04g01617 622 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.5 19 608 - -
Cma04g01617 622 SUPERFAMILY Protein kinase-like (PK-like) 287 597 IPR011009 -
Cma04g01617 622 ProSiteProfiles Protein kinase domain profile. 306 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01617 622 ProSitePatterns Tyrosine protein kinases specific active-site signature. 440 452 IPR008266 GO:0004672|GO:0006468
Cma04g01617 622 Gene3D Transferase(Phosphotransferase) domain 1 392 616 - -
Cma04g01617 622 Pfam Protein kinase domain 308 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01617 622 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 608 IPR045274 GO:0007166
Cma04g01617 622 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Cma04g01617 622 Pfam Wall-associated receptor kinase C-terminal 173 229 IPR032872 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01617 Cma18g01193 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01617 Cma-Chr4:8165758 Cma15g00054 Cma-Chr15:282771 1.19E-90 dispersed
Cma18g01193 Cma-Chr18:9461541 Cma04g01617 Cma-Chr4:8165758 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68511 PF00069 Pkinase 4.30E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01617 - - cmos:111458417 1175.23