Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01618 ATGGAGTTTTTCGCCTCTTTCACTTCGATCAAGCTCCGGAGCCACCTCTGTAAGTACTTATTGGCGAACGACGATCGCCAAACCGTTCGCCAGACCACTAAGGCCTCCGCCGAGGGCGCCATTTGGAGCGTCGAATTCGTCGAGGGAAAAATCGGTGCAATTCGTCTCCAGAGTTGCCATGGCCGTTACCTTTCCGCTACTGACCTTAATTTTTTACTCGGTGCCACTGGGAAGAAGGTGACGCTGCAAACCAAATACGAAAATCTCGGTGCGCCGTGGAGTGTGGAGTGGGAGCCTGTACGCGACGGCGATCGGGTGAAGTTGATGAGTTGGTGTGGTACGTTTTTGAGGGGGAACGGGGTTACTCCGCCGTGGAGGAACTCTGTGACTCATGATGAGCCGCGATTCTCCTCCACTAAGGGGTGGATTTTGTGGGACGTGGAAGCGGTGGATGAAACTCCGAAGTATTGTTTATTGATGAGTCGAAGGACGTGGTCGATGTCTAATTCTTCCGATGAGTTTTCCGCCTCTGGAAAAAGTTCTCCGGCCACTCCCAAATCTGTTCGGCGATCCTCCACGTTCCAGCTCAAATCTTGCTCCGCCAACAACCTTCGATCCGCCATGGATTTCTTCCGCAACGCCAAGACCGTCCGCCTCCGCAGCCATCACGACAAGTACCTGGTCGCCGACAACGACGAGGAGTCGGTTAACCAAGACCGTAGTGGATCTTCCAAAACTGCTCGCTGGTCCGTCGAGTTTGCATCTGGCGCCAGCTCTGACTCGATCATCCGTCTCAAAAGCTGCTACGGCAAGTACCTGACCGCCAGCAATCAGCCTTTCTTGCTCGGAATGACCGGGCGGAAAGTGCTTCAAACCCTTCCTCGACGGCTCGATTCGTCTGTCGAATGGGAACCCGTCAGAGAAGGGTCCCAGGTCAAGCTCAAGACCCGATATGGGAATTTTTTGAGAGCCAATGGGGGTCTACCGCCATGGCGGAATTCGGTCACTCATGATATTCCGAGTCGAACCGCCACACAGGATTGGATCCTCTGGGACATCGACGTTGTTGAGATTCAAGTCCAGTCTGCAAATCATAAAGCTGCCACAATTGAGCATATGGATTCTCTGGATTTCAACCCCGGCTCGCCCCCTTCTGCCTCTGGCAAATCGTCCAATTACCCTAGACTTGAGTCTACTGATTCGACTGTTAGTTTACCTCCCAAATCTGAGGGAAGGACGATTTACTACCACGTGGCTGATGAAAGTGGAGATGTAGATGAAGATACAGTGGAGGGTTCTTCTTTTATGTTCAAAGGAAATGGGGTTGAGGAACTGACTCATAAAATGGAGGAAGAAACAGGAATCAAAGGTATCATTGTGTGTACCCGCAATCCATTAAATGGTAATCTCTATCCCCTTCGCCTGCAACTTCCTCCCAACAATGCAACCATGCATGTGGTTGCCGTTCCCGAGTCATCAAAATTGGGGAAGGACTTCGAAAAACAACGTTTATTATGA 1518 51.32 MEFFASFTSIKLRSHLCKYLLANDDRQTVRQTTKASAEGAIWSVEFVEGKIGAIRLQSCHGRYLSATDLNFLLGATGKKVTLQTKYENLGAPWSVEWEPVRDGDRVKLMSWCGTFLRGNGVTPPWRNSVTHDEPRFSSTKGWILWDVEAVDETPKYCLLMSRRTWSMSNSSDEFSASGKSSPATPKSVRRSSTFQLKSCSANNLRSAMDFFRNAKTVRLRSHHDKYLVADNDEESVNQDRSGSSKTARWSVEFASGASSDSIIRLKSCYGKYLTASNQPFLLGMTGRKVLQTLPRRLDSSVEWEPVREGSQVKLKTRYGNFLRANGGLPPWRNSVTHDIPSRTATQDWILWDIDVVEIQVQSANHKAATIEHMDSLDFNPGSPPSASGKSSNYPRLESTDSTVSLPPKSEGRTIYYHVADESGDVDEDTVEGSSFMFKGNGVEELTHKMEEETGIKGIIVCTRNPLNGNLYPLRLQLPPNNATMHVVAVPESSKLGKDFEKQRLL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8168205 8173281 + CmaCh04G016180.1 Cma04g01618 292699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01618 505 SUPERFAMILY Actin-crosslinking proteins 10 147 IPR008999 -
Cma04g01618 505 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 1 199 - -
Cma04g01618 505 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 201 494 - -
Cma04g01618 505 MobiDBLite consensus disorder prediction 168 189 - -
Cma04g01618 505 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 199 - -
Cma04g01618 505 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 201 494 - -
Cma04g01618 505 MobiDBLite consensus disorder prediction 380 408 - -
Cma04g01618 505 MobiDBLite consensus disorder prediction 374 408 - -
Cma04g01618 505 Gene3D - 215 338 - -
Cma04g01618 505 Pfam Domain of unknown function (DUF569) 1 145 IPR007679 -
Cma04g01618 505 Pfam Domain of unknown function (DUF569) 208 351 IPR007679 -
Cma04g01618 505 Gene3D - 5 142 - -
Cma04g01618 505 SUPERFAMILY Actin-crosslinking proteins 212 356 IPR008999 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01618 - - - csv:101205876 761.911
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01618 Cma18g01191 CCT
Cma04g01618 Cma18g01191 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01618 Cma-Chr4:8168205 Cma11g01044 Cma-Chr11:5729327 8.46E-151 dispersed
Cma12g00703 Cma-Chr12:3860971 Cma04g01618 Cma-Chr4:8168205 0 transposed
Cma18g01191 Cma-Chr18:9456955 Cma04g01618 Cma-Chr4:8168205 1.27E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g835 . Blo16g01138 Bda01g02249 Bda11g01241 Bpe13g00469 . . Bma15g00173 Cmo04g01696 Cmo18g01211 . Cma18g01191 . Car18g01098 . Cpe09g00140 Cpe01g01431 . . . . . . . . . . . . . . Cone13ag0988 Cone19ag0981 Cone8ag0625 Cone12ag0608 . Csa05g02398 Chy10g00958 Cme10g00467 Blo06g00892 . . Bda11g01241 . . Bma01g00078 Bma06g00656 . . . Cma04g01618 . Car04g01660 . . Cpe07g00237 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000505 4 4 2 5 3 3 5 3 3 4 3 3 5 4 4 5 3 4 5 3 4 4 3 4 3 3 3 6 5 2 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01618 Cma_Chr04 FPKM 4.236082 3.714994 12.738022 12.590372 2.530462 3.106266 2.566872 10.376174 9.837219 10.32835