Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01621 ATGGGGGTGGACTACTACAATGTGTTGAAGGTGAACAGAAATGCCAATGAAGAGGACCTGAAGAGGTCCTACAAGAGCTTGGCTATGAAATGGCATCCTGATAAGAATCCTTCCAACAAGAAAGAGGCGGAGGCAAAGTTCAAGCAGATCTCTGAGGCTTATGATGTTTTAAGCGACGCTAAGAAGCGTCAGATCTACGATCTCTACGGTGAGGAGGCTCTCAATTCCGCCGATTTTGTTCCTCCGCCCGATTCCAATCCCTCTTTTTCTTATTTCCCTCGCGATGCCGATGACATTTTTGCCGAGTTTTTCGGCGGAGCTGGGAGTGCTAAGAGCGGAGGGTTTAAGAGAGAGAGTTTGTTTAGGAATGGGAAGGCGGAGGCTGGGAAGAAATCGAATAGGAAAGCACCGCCAATTGAGAGCAAGTTAATGTGTAGCTTGGAGGAGATTTACAAGGGTTCGCGAAGAAAGATGAGGATTTCCCGCACTGTCCCCGATGATTTTGGGAAGCCAAAAACTGTTGATGAAGTGTTAAAAATAGATATTAAACCTGGTTGGAAGAAGGGGACAAAAGTCACTTTCCCTGAGAAAGGCAATCAAGAACCTGGAGTTTCTCCTGCTGATCTTATATTTATCATCGATGAGAAACCTCATCCTGTATTTGAGAGGGATGGTAATGATTTGGTAATCAATCAGAAAATATCTCTATTAGAAGCACTCACTGGAAAGACATTGAACGTTACAACTTTGGATGGAAGAAATCTCACTTCTGTAACTGATATTGTCAAACCCGGTTACGAGGTAGTGATCCAGAATGAAGGAATGCCCATCTCTAAAGAACCAAACAAGAAGGGGAACCTAAGGATCAAGTTTGATATCATTTTCCCATCAATGCTTACTTTTGAACAGAAATCTGATCTAAGAAGGGCTTTGGGTGGTTTTGATTAA 948 43.25 MGVDYYNVLKVNRNANEEDLKRSYKSLAMKWHPDKNPSNKKEAEAKFKQISEAYDVLSDAKKRQIYDLYGEEALNSADFVPPPDSNPSFSYFPRDADDIFAEFFGGAGSAKSGGFKRESLFRNGKAEAGKKSNRKAPPIESKLMCSLEEIYKGSRRKMRISRTVPDDFGKPKTVDEVLKIDIKPGWKKGTKVTFPEKGNQEPGVSPADLIFIIDEKPHPVFERDGNDLVINQKISLLEALTGKTLNVTTLDGRNLTSVTDIVKPGYEVVIQNEGMPISKEPNKKGNLRIKFDIIFPSMLTFEQKSDLRRALGGFD 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8175445 8177175 + CmaCh04G016210.1 Cma04g01621 292702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01621 315 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 313 - -
Cma04g01621 315 Gene3D - 138 216 - -
Cma04g01621 315 CDD DnaJ 4 59 IPR001623 -
Cma04g01621 315 Pfam DnaJ domain 4 67 IPR001623 -
Cma04g01621 315 Gene3D DnaJ domain 3 116 IPR036869 -
Cma04g01621 315 SUPERFAMILY HSP40/DnaJ peptide-binding domain 138 219 IPR008971 GO:0006457|GO:0051082
Cma04g01621 315 Gene3D - 218 297 - -
Cma04g01621 315 Coils Coil 40 60 - -
Cma04g01621 315 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 313 - -
Cma04g01621 315 SUPERFAMILY Chaperone J-domain 3 107 IPR036869 -
Cma04g01621 315 PRINTS DnaJ domain signature 6 24 IPR001623 -
Cma04g01621 315 PRINTS DnaJ domain signature 24 39 IPR001623 -
Cma04g01621 315 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cma04g01621 315 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cma04g01621 315 Pfam DnaJ C terminal domain 139 296 IPR002939 -
Cma04g01621 315 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Cma04g01621 315 SUPERFAMILY HSP40/DnaJ peptide-binding domain 220 305 IPR008971 GO:0006457|GO:0051082
Cma04g01621 315 CDD DnaJ_C 137 299 - -
Cma04g01621 315 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Cma04g01621 315 SMART dnaj_3 3 62 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01621 K09510 DNAJB4; DnaJ homolog subfamily B member 4 - csv:101205643 574.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01621 Cma18g01189 CCT
Cma04g01621 Cma18g01189 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01621 Cma-Chr4:8175445 Cma13g00924 Cma-Chr13:7334918 1.68E-128 dispersed
Cma18g01189 Cma-Chr18:9451255 Cma04g01621 Cma-Chr4:8175445 0 wgd
Cma18g00131 Cma-Chr18:657426 Cma04g01621 Cma-Chr4:8175445 7.01E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g837 . . . . . . . . Cmo04g01698 Cmo18g01210 . Cma18g01189 . Car18g01097 Sed06g1576 Cpe09g00141 Cpe01g01433 Bhi07g01633 Tan04g1134 Cmetu10g0412 Lac13g0266 Hepe10g1703 . . Cla05g02486 Cam05g2670 Cec05g2704 Cco05g2739 Clacu05g2672 Cmu05g2526 Cre05g2641 Cone13ag0986 Cone19ag0978 . . . Csa05g02400 Chy10g00962 Cme10g00464 . . . . . . . . . . . Cma04g01621 . Car04g01662 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009703 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01621 Cma_Chr04 FPKM 9.56962 11.467788 11.815289 10.367857 11.457043 9.389773 13.870832 10.343191 11.141598 10.557673