Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01626 ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCACCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCCTTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAAATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCTCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAATAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA 585 52.14 MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8198677 8199986 - CmaCh04G016260.1 Cma04g01626 292707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01626 194 SMART rrm1_1 49 119 IPR000504 GO:0003723
Cma04g01626 194 MobiDBLite consensus disorder prediction 26 41 - -
Cma04g01626 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 101 IPR000504 GO:0003723
Cma04g01626 194 MobiDBLite consensus disorder prediction 1 41 - -
Cma04g01626 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 123 IPR000504 GO:0003723
Cma04g01626 194 MobiDBLite consensus disorder prediction 160 181 - -
Cma04g01626 194 CDD RRM_SF 52 94 - -
Cma04g01626 194 SUPERFAMILY RNA-binding domain, RBD 32 133 IPR035979 GO:0003676
Cma04g01626 194 Gene3D - 2 129 IPR012677 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01626 - - bhj:120081339 319.701