Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01630 ATGGAATTTCAATTGGGTTTGATTGAACAATCACTTAACAGTCGTTATTCGCTCTGGGTCCGTGAAGCTCTTAATGATTTGTCGGATAATTTTACAATCACTGATCCCAGTATGTCGGGTCACCCAATTGTGTTCGTGAGCCGTGGATTCTTGAAGATGACTGGATATACCAAAGAAGAGGTGATTGGAAAAAATGGGAGGATGTTTCAGGGCCCAAAAACTTGTAGGAGTTCAGTAATGCAAATTCGCGAGGCAATTCGGGAAGAGAAGGGGATTCAAATTAATTTGCTAAATTATCGTAAAGATGGTACACCCTTCTGGGTCTTTTTTCAACTGAGCCCCGTCTTCTGCAAGGAAGATGGGCGGATCATTCACTTTGTGGGTGTTCAGGTGCCGATATGGAAGAATTCAAGGAAATCTATATGTGGGTTCGCTAGAATTCAAGGTGTTCCTTATGAGAATGAATTTAGAGCGTGCAAAAGTCTTTTAGAGTCCTGCCGCCGGGAGTTGTTGTCTGATTCTATCTCGGAATTGGATTTTCTTTTGAACAGAGATTCACCACCGGATTCCGACATCAGAGGAGTAGACATTGAAGAACCATGTGAAGCTTGTGATGATGAGAAGCAAAGAGCTGCAATTGCTATTAGTAACATCTTATCTGTCCTAACTCATCACAGTGAGGTAACTGGCAGATTGGTGTGCGAAAGGAGATGCAGCGTGCCTAGGGTGGGCATTCTTTGTTCATCCTTGAATACATCTCTTAACAGAATTAAACAGAGCTTTGTATTAACTGATCCGAACTTACCAGACATGCCTATAGTTTATGCGAGTGACGAGTTTTTGAAATTAACAGGTTATACTAGACGTGAAGTGCTTGGGCGCAACTGTAGATTCTTAAGTGGAATTGACACGGATTCTTCAACCCTTTTTAAGATAAAGGAAAGTCTTCAATCTGAACAAGCTTGCACTGTACGGATTTTAAATTACAGGAAAAATAAGAGCTCATTTTGGAATGATCTCCACATATCACCTGTTCGAAATGCTTCAGGAAAGGTAGCGTACTTTGTGGGTGTCCAGATGGATGAAGATGATAAAAAGCAGGATGAACATGGGTTGAACCCTAAGATGAAACAACTTAGCACCGTGGGTGCAGTCAGGGTGGCCGTGAGGAGCTTGTCCATGACCGTGGGATGTTCACGGGGCTAG 1206 42.54 MEFQLGLIEQSLNSRYSLWVREALNDLSDNFTITDPSMSGHPIVFVSRGFLKMTGYTKEEVIGKNGRMFQGPKTCRSSVMQIREAIREEKGIQINLLNYRKDGTPFWVFFQLSPVFCKEDGRIIHFVGVQVPIWKNSRKSICGFARIQGVPYENEFRACKSLLESCRRELLSDSISELDFLLNRDSPPDSDIRGVDIEEPCEACDDEKQRAAIAISNILSVLTHHSEVTGRLVCERRCSVPRVGILCSSLNTSLNRIKQSFVLTDPNLPDMPIVYASDEFLKLTGYTRREVLGRNCRFLSGIDTDSSTLFKIKESLQSEQACTVRILNYRKNKSSFWNDLHISPVRNASGKVAYFVGVQMDEDDKKQDEHGLNPKMKQLSTVGAVRVAVRSLSMTVGCSRG 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8216817 8220606 - CmaCh04G016300.1 Cma04g01630 292711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01630 401 Gene3D PAS domain 30 170 - -
Cma04g01630 401 Gene3D PAS domain 260 397 - -
Cma04g01630 401 ProSiteProfiles PAC domain profile. 320 374 IPR000700 -
Cma04g01630 401 ProSiteProfiles PAS repeat profile. 20 89 IPR000014 -
Cma04g01630 401 SUPERFAMILY PYP-like sensor domain (PAS domain) 261 361 IPR035965 -
Cma04g01630 401 CDD PAS 269 361 IPR000014 -
Cma04g01630 401 CDD PAS 43 133 IPR000014 -
Cma04g01630 401 SMART pas_2 248 321 IPR000014 -
Cma04g01630 401 SMART pas_2 18 87 IPR000014 -
Cma04g01630 401 PANTHER PROTEIN TWIN LOV 1 8 393 - -
Cma04g01630 401 TIGRFAM sensory_box: PAS domain S-box protein 43 128 IPR000014 -
Cma04g01630 401 TIGRFAM sensory_box: PAS domain S-box protein 273 369 IPR000014 -
Cma04g01630 401 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Cma04g01630 401 PANTHER PROTEIN TWIN LOV 1 8 393 - -
Cma04g01630 401 ProSiteProfiles PAS repeat profile. 273 295 IPR000014 -
Cma04g01630 401 SMART pac_2 93 136 IPR001610 -
Cma04g01630 401 SMART pac_2 323 365 IPR001610 -
Cma04g01630 401 Pfam PAS domain 40 131 IPR000014 -
Cma04g01630 401 Pfam PAS domain 260 361 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01630 - - - csv:101203697 717.998
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01630 Cma-Chr4:8216817 Cma02g00309 Cma-Chr2:1464696 3.00E-25 dispersed
Cma04g01630 Cma-Chr4:8216817 Cma20g00692 Cma-Chr20:3167759 4.51E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g848 . . . . . . . . Cmo04g01708 . . . . . . . Cpe01g01442 Bhi07g01608 . . . . . . . . . . . . . Cone13ag0984 Cone19ag0974 . . Lsi04g00459 Csa05g02417 Chy10g00974 Cme10g00448 . . . . . . . . . . . Cma04g01630 . Car04g01670 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013588 0 4 0 0 0 0 2 0 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 2 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01630 Cma_Chr04 FPKM 21.220694 22.011095 17.082045 16.238625 11.16179 9.174705 11.769117 21.410261 21.103523 24.83387