Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01633 ATGGAGGTAATCGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTGAGGGAATCGAAGGGGAAGAAGAAGAAGCAGAAGAACAACAAGGAACAGATTGGAAACTTGGAAGAGGAGACTGGTTGTTGGATTGCTTTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGACAGTTCGATTAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGATCAACCAACACCTCGAGAGATATCTTCAACAGCCACAAGTATGAGTAATGCAGAGAGTACTTCATCCACTTCCAAACTAGAAGAGGAACTTAAAATTTCGCCTCATCTACGGAATTTTTCATTTAATGATCTTAAGTTGGCTACAAGGAACTTTAGACCCGAGAGTCTACTTGGTGAGGGTGGTTTTGGTTGTGTTTTCAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGTACAGGACTCACTGTTGCTGTTAAAACGCTCAACCACGATGGTCTTCAGGGTCATAAAGAGTGGATGGCTGAAGTGAACTTTCTTAGTGATCTCAAACATCCGAACTTAGTCAGACTTATCGGTTACTGCAACGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTCTACCTCTTCCGTGGTCTATTAGGATGAAAATTGCTCTAGGGGCTGCCAAGGGCCTTGCTTTTCTTCATGAGGAAGCACAAAGACCTGTGATATATCGTGATTTTAAAACGTCCAACATTCTATTAGATGCCGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCTGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACGTATGGCTATGCAGCTCCAGAATACGTAATGACCGGACATCTTACATCGAGGAGTGATGTTTACAGTTTTGGAGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAATCGTCCTAATGGTGAACATAACCTTGTGGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGTTTGATAGACCCTAGGCTTGAAGGGCATTTCTCAATAAAAGGTGCCCAAAAGGCAGCACAATTAGCTGTTCAATGCCTTAGTCGAGATCAAAAGATCAGACCTCTAATGAGTGAAGTTGTAGAAGCCTTGAAGCCCCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATACGATTGAGCCCAATGGCGAGAAATGGCTACCATGCCGGGGCTGGACCAGTTCCGAAGAACGGGCAGCAACTACGCAGTTATTCAGTCGCCAATGGTTCTCATACTTCTCCATATCATAATCAGCAACCCCATCCATCTCCAAAACCCAATAGGGAGTGGCAACTGTGGGGTCATGTCCAATTGGGATTGATCCTCTTCTCTGTCACTGTGGTGAAGGGAAGCACAGATTTTACCACCGTCCTAGATTCCATACGCCATAACCTTTACTGTCCAAATAAGGTTCTTTATCGTGGCCGAAAGAGCTTTGTCAATTATAATTACACTTCTTATAGAGTTCCTGCTTTTAAAGCTACCACTACTAATGCGTCTCTTCTTCAAACTTTCCAATCTATGGATGTCTTGCTCAAGGATACGTTTCCTCTCAACCGCATCGAAAAGTTGAAGGGAATGATATCTTTCAGACTAGCCCAGGTGAAGGACCAGAACCAATTGGAGCTTACTATAGGATGTAACCTTGCTGGGAAATGGATCCTTCAATGGGGAGCGTCCTCAATGGACGACAGTGGCAGCGAATGGGATCAACCTCCTGAAGAAATTACACCACCGGGCTCAATACCCATCAAAGATTATGCTATTGAGACACCATTGAAGAAATCATCCTCATCTTCTTCGGGAGATTGTGTTCATGAAGTGAAGATTCATCATGTTCTCGACAAAACAATTGCAACTATAAATTTTGTTTTGAAGGATGAAGAAACTGGAGTTTGGTATCAGCACAAAGGGAGAGATTTTAAGGTGCCTCTTTTAGAATACCATGGTGAAGATGAAAATATAGTTGGAACAAAAAAGGATTTGGATTTATGGCCAGGGGCTTTGGTTCAGCTATACAACCTCCTTGTCAAAGCAGAATCAAATTCTAAAGATCAAGGAAGCAATGGTGAATCTGGAGATACAAAGGAGAACAAAATGTATTTGGAAGGATTCTATGAAGAGCTGCCTATTGTAAAAGAAGTAGCTGTTGATAATTTGGTCTGTGTCTCGGTTAGTAAGCGTCCAGAAACAACAAAATATCTTTTGTATTTGGAAACTGATCTACCTGGAGATGTTATTGTTCAATGGGGAGCGTGCAGAGATGAGACTAGGAAATGGGAGATTCCAGCTGCTCCTCATCCTCCGGAAACAACAGTGTTCAAGAACAAGGCCTTGCGTACCCTACTGCAGCCGAAAGAAGGGGGGAAGGGAAGTTGTGGAACTTTTACCATAGAAGAAGATTTTGGAGGATTTCATTTTGTTCTCAAGCAGAATGAGAACTCTTGGTTAAACTATAAGGGAGATGACTTCTATGTCCCCTTCTCAAGTTCTGGTAACCTGCCTGATCACCCGAGACGGAGCGAATCAGAGGATGCAGAAGTATCTAGAAAACCTGAAGAAGAATCTGAAGGAGTTTCTGTTACTGACATTTCTTCTCAGAAGACTCAAAAGAAAAAAACCAGAGAAGCACAAGAAAGCATTCTTCAGGAAATTGAAAAATTGTCTGCTGAAGCCTATAATCTCTTCAGAAGTTCTTCTTCAACAGAGGAAATAATTGAGACGCCTAAACCTGTCGAACCACCCATTCAAACATCCTCTGGCACAGGTACAGGTTTTGAAATATTGTGCCAAGGGTTCAATTGGGAATCTCACAAGTCTGGAAGATGGTACATGATACTTAAAGATAAAGCTGCAGAATTATCCTCCCTTGGTTTCACTATGCTATGGTTGCCACCTCCAACAGAATCTGTGTCACCAGAGGGGTATATGCCGAAGGACTTGTATAATTTAAGTTCCAGATATGGTAACATTGATGAGCTGAAGGATGCTGTGAAGACGTTCCATGATGTTGGGATAAAGGTTCTTGGTGATGTTGTCCTAAATCATCGTTGTGCACATTTTAGAAATCAAAATGGTATTTGGAATATATTTGGTGGTCGCTTAAATTGGGATGAACGTGCTGTAGTTTCAGATGATCCACATTTTCAGGGTAGGGGCAACAAAAGTAGCGGAGATAACTTTCATGCTGCGCCTAACATTGATCATTCACAAGATTTTGTGAGAAATGATATTAAAGAATGGTTATGCTGGTTAAGAAAGGAGATTGGGTACGATGGGTGGAGGCTTGATTTTGTCAGAGGATTCTGGGGGGGTTATGTGAAGGATTACTTGGATGCAAGTGAACCTTACTTTGCTGTTGGCGAATACTGGGATTCCTTGAGCTATACGTATGGTGTGATGGATCATAATCAAGATGCTCATAGACAGAGAATCATTGACTGGATAAATGCTACTAATGGAACTGCTGGGGCATTTGATGTTACTACCAAAGGGATTCTTCATTCTGCAGTTGATAGATGTGAATATTGGCGTTTATCAGATCAGAAACGAAAGCCTCCTGGAGTCGTTGGATGGTGGCCCTCTCGTGCTGTTACCTTTATAGAGAACCACGACACTGGATCTACTCAGGGTCATTGGAGATTTCCTAGTGGAAAAGAAATGCAAGGATATGCTTACATCCTGACTCATCCTGGGACACCATCACTATTCTTTGACCACATTTTCTCCCACTACAAATCTGAGATTGCAACACTTATTTGTCTTAGAAAACGGCAGAAACTTCACTGCCGGAGCGTAGTTAAAATTGAGAAGGCAGAAAGGGATGTGTATGCAGCCACCATGGATGAAAAAGTTGGAGTGAAGATTGGACCAGGCAACTTTGAACCTCCTAGAGGATCCAGTGGATGGTCATTGGTTATGGAGGGAAAAGACTACAAGGTCTGGGAAGTATCCAACTAA 4137 42.45 MEVIAEDGKVESREVRESKGKKKKQKNNKEQIGNLEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPREISSTATSMSNAESTSSTSKLEEELKISPHLRNFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAAQLAVQCLSRDQKIRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRLSPMARNGYHAGAGPVPKNGQQLRSYSVANGSHTSPYHNQQPHPSPKPNREWQLWGHVQLGLILFSVTVVKGSTDFTTVLDSIRHNLYCPNKVLYRGRKSFVNYNYTSYRVPAFKATTTNASLLQTFQSMDVLLKDTFPLNRIEKLKGMISFRLAQVKDQNQLELTIGCNLAGKWILQWGASSMDDSGSEWDQPPEEITPPGSIPIKDYAIETPLKKSSSSSSGDCVHEVKIHHVLDKTIATINFVLKDEETGVWYQHKGRDFKVPLLEYHGEDENIVGTKKDLDLWPGALVQLYNLLVKAESNSKDQGSNGESGDTKENKMYLEGFYEELPIVKEVAVDNLVCVSVSKRPETTKYLLYLETDLPGDVIVQWGACRDETRKWEIPAAPHPPETTVFKNKALRTLLQPKEGGKGSCGTFTIEEDFGGFHFVLKQNENSWLNYKGDDFYVPFSSSGNLPDHPRRSESEDAEVSRKPEEESEGVSVTDISSQKTQKKKTREAQESILQEIEKLSAEAYNLFRSSSSTEEIIETPKPVEPPIQTSSGTGTGFEILCQGFNWESHKSGRWYMILKDKAAELSSLGFTMLWLPPPTESVSPEGYMPKDLYNLSSRYGNIDELKDAVKTFHDVGIKVLGDVVLNHRCAHFRNQNGIWNIFGGRLNWDERAVVSDDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRNDIKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYLDASEPYFAVGEYWDSLSYTYGVMDHNQDAHRQRIIDWINATNGTAGAFDVTTKGILHSAVDRCEYWRLSDQKRKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYILTHPGTPSLFFDHIFSHYKSEIATLICLRKRQKLHCRSVVKIEKAERDVYAATMDEKVGVKIGPGNFEPPRGSSGWSLVMEGKDYKVWEVSN 1378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8233692 8244427 + CmaCh04G016330.1 Cma04g01633 292714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01633 1378 Pfam Alpha amylase, catalytic domain 1013 1266 IPR006047 GO:0005975
Cma04g01633 1378 SUPERFAMILY (Trans)glycosidases 987 1303 IPR017853 -
Cma04g01633 1378 SUPERFAMILY Protein kinase-like (PK-like) 108 412 IPR011009 -
Cma04g01633 1378 Gene3D Phosphorylase Kinase; domain 1 90 217 - -
Cma04g01633 1378 MobiDBLite consensus disorder prediction 465 486 - -
Cma04g01633 1378 Gene3D - 1320 1376 IPR013780 -
Cma04g01633 1378 MobiDBLite consensus disorder prediction 889 934 - -
Cma04g01633 1378 PANTHER ALPHA-AMYLASE 573 1377 - -
Cma04g01633 1378 CDD STKc_IRAK 138 415 - -
Cma04g01633 1378 SMART serkin_6 132 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01633 1378 MobiDBLite consensus disorder prediction 1 18 - -
Cma04g01633 1378 Gene3D Glycosidases 986 1319 - -
Cma04g01633 1378 Pfam Alpha-amylase C-terminal beta-sheet domain 1317 1375 IPR012850 GO:0004556|GO:0005509|GO:0005975
Cma04g01633 1378 SMART aamy 986 1315 IPR006047 GO:0005975
Cma04g01633 1378 MobiDBLite consensus disorder prediction 70 104 - -
Cma04g01633 1378 MobiDBLite consensus disorder prediction 70 109 - -
Cma04g01633 1378 SUPERFAMILY Glycosyl hydrolase domain 1320 1375 - -
Cma04g01633 1378 SMART alpha-amyl_c2 1316 1376 IPR012850 GO:0004556|GO:0005509|GO:0005975
Cma04g01633 1378 Coils Coil 930 950 - -
Cma04g01633 1378 Gene3D Transferase(Phosphotransferase) domain 1 218 433 - -
Cma04g01633 1378 MobiDBLite consensus disorder prediction 465 484 - -
Cma04g01633 1378 CDD AmyAc_arch_bac_plant_AmyA 987 1326 - -
Cma04g01633 1378 Pfam Protein tyrosine and serine/threonine kinase 136 412 IPR001245 GO:0004672|GO:0006468
Cma04g01633 1378 MobiDBLite consensus disorder prediction 896 917 - -
Cma04g01633 1378 MobiDBLite consensus disorder prediction 1 31 - -
Cma04g01633 1378 ProSiteProfiles Protein kinase domain profile. 132 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01633 1378 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 573 1377 - -
Cma04g01633 1378 ProSitePatterns Protein kinases ATP-binding region signature. 138 170 IPR017441 GO:0005524
Cma04g01633 1378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01633 Cma18g01172 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00294 Cma-Chr3:3832164 Cma04g01633 Cma-Chr4:8233692 8.02E-61 dispersed
Cma04g01633 Cma-Chr4:8233692 Cma18g01174 Cma-Chr18:9397046 0 dispersed
Cma01g00451 Cma-Chr1:2272890 Cma04g01633 Cma-Chr4:8233692 1.95E-168 wgd
Cma15g00284 Cma-Chr15:1345263 Cma04g01633 Cma-Chr4:8233692 0 wgd
Cma18g01172 Cma-Chr18:9385903 Cma04g01633 Cma-Chr4:8233692 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68512 PF00128 Alpha-amylase 5.20E-15 CL0058 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01633 K01176 - csv:101202976 1474.14