Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01634 | ATGGTAGCACCTACGAGCAGAGCTATGCTTGGGGTTCTGCTAACATTGTCCTTGGTGGCTACTGCATATGCTGACATTGGAAACTTCGATGATTACTGGAAATCACGCGCCGCCAAGGCTGAGAAAGCCGCCGCCAAGGCCTTCGACCCTAATCCAGAGAACGTCACCGACATCCTCAATGCTGAAGTTGAGCAGGAATTGAGCGGAAGCAATGATACGAGAAGGAATTTGAAGAGATATACAGGGCCATGTCTAGCCACTAATCCCATTGACCGGTGCTGGAGATGCGACCCCAATTGGGCCAAAAACAGGAAGAAGCTGGCCGATTGTGTTCTGGGTTTTGGCTGGAAGACCATAGGCGGGAAGTTGGGTCCATTCTACGTGGTGAACGATTCGTCGGACTCGGATATCATGGAACCAAAACCTGGGACCCTCCGACATGCTGTGATCCAAAAGGGGCCGTTGTGGATCACATTCTCAACCAACATGGCCATTAGGCTAACTCAGGAGCTCATCGTGTCCAGCGACAAGACCATAGATGCAAGAGGCGCCAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTATGTACAAAATGTGATCATCCATGGCCTTCGTATCCATCACATCGTCATGGGTAGCGGCGGAATGATCAGGGACTCTGTGGACCATGTGGGTTTGAGGACAATGAGCGACGGCGATGGCATTTCAATTTTCGGTTCCTCCAACATTTGGATTGACCATGTTTCCATGTCCAATTGTCAAGATGGTCTAATCGATGCCATCATGGGATCCACTGCCATCACCATATCCAATAGCCATTTCACTCACCACAATGATGTGATGCTGTTCGGAGCAAGCGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTGGCATTCAATCACTTTGGTCAAGGGTTGGTGCAGAGGATGCCAAGGTGCCGATGGGGGTTCTTCCATGTCGTCAACAATGACTACACTCATTGGCTTATGTATGCCATAGGTGGTAGCCAGCATCCCATCATTATCAGCCAGGGCAATCGATTCATTGCTCCTCCAAATGTAAATGCTAAAGAGGTGACAAAGAGAGAGTACTCGCCGGAGAGTGTGTGGAAGACGTGGACATGGAGATCAGAGGGAGACTTGATGATGAACGGAGCATTCTTTGTTACCTCCGGCGACCAGAGGAAGAAACGACCTTTCTCAAGGATGGATATGATCTCGTACAAAGAAGGGACATACGTTACCAGAATGACACGTATGTCAGGTGCGCTTCCCTGCTTCATCGGCAGACCATGCTAA | 1314 | 49.39 | MVAPTSRAMLGVLLTLSLVATAYADIGNFDDYWKSRAAKAEKAAAKAFDPNPENVTDILNAEVEQELSGSNDTRRNLKRYTGPCLATNPIDRCWRCDPNWAKNRKKLADCVLGFGWKTIGGKLGPFYVVNDSSDSDIMEPKPGTLRHAVIQKGPLWITFSTNMAIRLTQELIVSSDKTIDARGANVQIAYGAGITLQYVQNVIIHGLRIHHIVMGSGGMIRDSVDHVGLRTMSDGDGISIFGSSNIWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNDVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPIIISQGNRFIAPPNVNAKEVTKREYSPESVWKTWTWRSEGDLMMNGAFFVTSGDQRKKRPFSRMDMISYKEGTYVTRMTRMSGALPCFIGRPC | 437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8245667 | 8247553 | + | CmaCh04G016340.1 | Cma04g01634 | 292715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01634 | 437 | PANTHER | PECTATE LYASE 18-RELATED | 12 | 437 | IPR045032 | GO:0030570 | |
Cma04g01634 | 437 | SUPERFAMILY | Pectin lyase-like | 76 | 429 | IPR011050 | - | |
Cma04g01634 | 437 | PANTHER | PECTATE LYASE | 12 | 437 | - | - | |
Cma04g01634 | 437 | SMART | amb_all | 162 | 359 | IPR002022 | - | |
Cma04g01634 | 437 | Pfam | Pectate lyase, N terminus | 26 | 77 | IPR007524 | GO:0030570 | |
Cma04g01634 | 437 | PRINTS | Pollen allergen Amb family signature | 110 | 127 | IPR018082 | - | |
Cma04g01634 | 437 | PRINTS | Pollen allergen Amb family signature | 134 | 159 | IPR018082 | - | |
Cma04g01634 | 437 | PRINTS | Pollen allergen Amb family signature | 170 | 186 | IPR018082 | - | |
Cma04g01634 | 437 | PRINTS | Pollen allergen Amb family signature | 234 | 255 | IPR018082 | - | |
Cma04g01634 | 437 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - | |
Cma04g01634 | 437 | PRINTS | Pollen allergen Amb family signature | 336 | 355 | IPR018082 | - | |
Cma04g01634 | 437 | PRINTS | Pollen allergen Amb family signature | 378 | 402 | IPR018082 | - | |
Cma04g01634 | 437 | PRINTS | Pollen allergen Amb family signature | 408 | 431 | IPR018082 | - | |
Cma04g01634 | 437 | Pfam | Pectate lyase | 172 | 353 | IPR002022 | - | |
Cma04g01634 | 437 | Gene3D | - | 87 | 430 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01634 | Cma-Chr4:8245667 | Cma12g00701 | Cma-Chr12:3828950 | 0 | dispersed | |
Cma18g00126 | Cma-Chr18:615357 | Cma04g01634 | Cma-Chr4:8245667 | 0 | wgd | |
Cma04g01634 | Cma-Chr4:8245667 | Cma05g00942 | Cma-Chr5:7598769 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01634 | K01728 | - | csv:101206497 | 771.926 |