Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01634 ATGGTAGCACCTACGAGCAGAGCTATGCTTGGGGTTCTGCTAACATTGTCCTTGGTGGCTACTGCATATGCTGACATTGGAAACTTCGATGATTACTGGAAATCACGCGCCGCCAAGGCTGAGAAAGCCGCCGCCAAGGCCTTCGACCCTAATCCAGAGAACGTCACCGACATCCTCAATGCTGAAGTTGAGCAGGAATTGAGCGGAAGCAATGATACGAGAAGGAATTTGAAGAGATATACAGGGCCATGTCTAGCCACTAATCCCATTGACCGGTGCTGGAGATGCGACCCCAATTGGGCCAAAAACAGGAAGAAGCTGGCCGATTGTGTTCTGGGTTTTGGCTGGAAGACCATAGGCGGGAAGTTGGGTCCATTCTACGTGGTGAACGATTCGTCGGACTCGGATATCATGGAACCAAAACCTGGGACCCTCCGACATGCTGTGATCCAAAAGGGGCCGTTGTGGATCACATTCTCAACCAACATGGCCATTAGGCTAACTCAGGAGCTCATCGTGTCCAGCGACAAGACCATAGATGCAAGAGGCGCCAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTATGTACAAAATGTGATCATCCATGGCCTTCGTATCCATCACATCGTCATGGGTAGCGGCGGAATGATCAGGGACTCTGTGGACCATGTGGGTTTGAGGACAATGAGCGACGGCGATGGCATTTCAATTTTCGGTTCCTCCAACATTTGGATTGACCATGTTTCCATGTCCAATTGTCAAGATGGTCTAATCGATGCCATCATGGGATCCACTGCCATCACCATATCCAATAGCCATTTCACTCACCACAATGATGTGATGCTGTTCGGAGCAAGCGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTGGCATTCAATCACTTTGGTCAAGGGTTGGTGCAGAGGATGCCAAGGTGCCGATGGGGGTTCTTCCATGTCGTCAACAATGACTACACTCATTGGCTTATGTATGCCATAGGTGGTAGCCAGCATCCCATCATTATCAGCCAGGGCAATCGATTCATTGCTCCTCCAAATGTAAATGCTAAAGAGGTGACAAAGAGAGAGTACTCGCCGGAGAGTGTGTGGAAGACGTGGACATGGAGATCAGAGGGAGACTTGATGATGAACGGAGCATTCTTTGTTACCTCCGGCGACCAGAGGAAGAAACGACCTTTCTCAAGGATGGATATGATCTCGTACAAAGAAGGGACATACGTTACCAGAATGACACGTATGTCAGGTGCGCTTCCCTGCTTCATCGGCAGACCATGCTAA 1314 49.39 MVAPTSRAMLGVLLTLSLVATAYADIGNFDDYWKSRAAKAEKAAAKAFDPNPENVTDILNAEVEQELSGSNDTRRNLKRYTGPCLATNPIDRCWRCDPNWAKNRKKLADCVLGFGWKTIGGKLGPFYVVNDSSDSDIMEPKPGTLRHAVIQKGPLWITFSTNMAIRLTQELIVSSDKTIDARGANVQIAYGAGITLQYVQNVIIHGLRIHHIVMGSGGMIRDSVDHVGLRTMSDGDGISIFGSSNIWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNDVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPIIISQGNRFIAPPNVNAKEVTKREYSPESVWKTWTWRSEGDLMMNGAFFVTSGDQRKKRPFSRMDMISYKEGTYVTRMTRMSGALPCFIGRPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8245667 8247553 + CmaCh04G016340.1 Cma04g01634 292715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01634 437 PANTHER PECTATE LYASE 18-RELATED 12 437 IPR045032 GO:0030570
Cma04g01634 437 SUPERFAMILY Pectin lyase-like 76 429 IPR011050 -
Cma04g01634 437 PANTHER PECTATE LYASE 12 437 - -
Cma04g01634 437 SMART amb_all 162 359 IPR002022 -
Cma04g01634 437 Pfam Pectate lyase, N terminus 26 77 IPR007524 GO:0030570
Cma04g01634 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Cma04g01634 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Cma04g01634 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Cma04g01634 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Cma04g01634 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Cma04g01634 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Cma04g01634 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Cma04g01634 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Cma04g01634 437 Pfam Pectate lyase 172 353 IPR002022 -
Cma04g01634 437 Gene3D - 87 430 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01634 Cma-Chr4:8245667 Cma12g00701 Cma-Chr12:3828950 0 dispersed
Cma18g00126 Cma-Chr18:615357 Cma04g01634 Cma-Chr4:8245667 0 wgd
Cma04g01634 Cma-Chr4:8245667 Cma05g00942 Cma-Chr5:7598769 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01634 K01728 - csv:101206497 771.926