Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01635 ATGGCTATGACAACTGGAGTAGGCCTTTCGAAGATTCTGATTCTTGTTGGAGCTGGCTACTCTAGTACGATCCTGCTTAAGAATGGTAAATTATCGGATGTGTTGGGTGAACTTCAGTCCTTGGTGAAGGGCTTAGAGAAGTCTGGGGAACAATATGAGGGTGATTCTGACTACTCTGATGCCATTGCTGCTCAGGTGCGTCGATTAGCTATGGAAGTTCGGCATCTCTCTTCTTCACGACAAATTACTATTCTCAATGGAAACTCTGGGACTGGGTTTTCATTCTCAGACCTTATGTATGTTACAAAGCGCAATATGGCTAATGCTGTCTCAAACTTAACTAAACATTTGGAGCACGTATCAGAGGCCCTTGCTGCAACAAAGAGGCATTTGACACAGCGGATTGAGAACTTGGATGATAAGATGTTGAAGCAGAATGAACTCTCGAAATTGATCAAAGAAGATGTAGCAGAAGTTCAAAAATCTCTTTCTGGCATCGACTTTGACTTGGCTCAGTTGCAAAACATGGTTTCTGGTTTGGATGGGAAACTATCTTCTCTTGAATATAAGCAGGAACTTGCAAATGTTGGTGTATTGTACTTGTGCAACGTTGTTGATGGAAAGGAAGCGAAAATGTCTGAAACTGTAAAGGAGCAGCTTAAACTTCCAGGCAGGACTCAGGGTCTGCTGACGCATCTGGAAACTCCTAATCTGAAGGGTCTTAAAGAACTTACTGATACGCTTTCACGAGATTTTACAGAAGGCCAACCAAAAGCCCTTCTCAGTTCACAACATTTACAGGAGGAATTTTTATGA 816 42.28 MAMTTGVGLSKILILVGAGYSSTILLKNGKLSDVLGELQSLVKGLEKSGEQYEGDSDYSDAIAAQVRRLAMEVRHLSSSRQITILNGNSGTGFSFSDLMYVTKRNMANAVSNLTKHLEHVSEALAATKRHLTQRIENLDDKMLKQNELSKLIKEDVAEVQKSLSGIDFDLAQLQNMVSGLDGKLSSLEYKQELANVGVLYLCNVVDGKEAKMSETVKEQLKLPGRTQGLLTHLETPNLKGLKELTDTLSRDFTEGQPKALLSSQHLQEEFL 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8247694 8253125 - CmaCh04G016350.1 Cma04g01635 292716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01635 271 PANTHER OS05G0182700 PROTEIN 1 260 - -
Cma04g01635 271 Coils Coil 121 148 - -
Cma04g01635 271 Pfam Protein of unknown function (DUF1664) 92 191 IPR012458 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01635 - - - mcha:111019198 441.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01635 Cma18g01171 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00207 Cma-Chr2:921097 Cma04g01635 Cma-Chr4:8247694 2.21E-58 dispersed
Cma04g01635 Cma-Chr4:8247694 Cma17g01436 Cma-Chr17:9437737 3.19E-20 dispersed
Cma18g01171 Cma-Chr18:9379613 Cma04g01635 Cma-Chr4:8247694 1.40E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g858 . Blo16g01130 . Bda11g01232 Bpe13g01429 . . . Cmo04g01713 Cmo18g01196 . Cma18g01171 . Car18g01080 . Cpe09g00156 Cpe01g01446 . . . . . . . . . . . . . . Cone13ag0977 Cone19ag0969 . . . . . . . . . Bda11g01232 . . . Bma06g00661 . . . Cma04g01635 . Car04g01676 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004024 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01635 Cma_Chr04 FPKM 10.211598 12.789506 12.777353 14.215679 18.442327 19.334875 19.243961 13.232325 12.238296 14.964011