Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01637 ATGAATCGCGAAATAGTGCGATTGGTGGCCAAAGGATTTTACGTTGAAGCATTCTCCATGTACTCGCAGCACCACTCAGCCTCCCTTAGTTCTCACAATTTCATTTTTCCTCCTCTCTTCAAAGCGTGCGCAAAGCTTAACTCGGTTCCACAAGGCCAAATGCTGCATACCCACTTGATGAAAGTGGGGTTTTCAGCAGACGTCTATGCAGCAACAGCCCTCACGGATATGTATTTGAAGCTTTTTCATGTTGATGACGCTCTGAAAGTGTTCGACGAAATGCCCCACAGAAACACGGCGTCTTTAAACGCAATGATTTCTGGGTTTCTGTTGAATGGTTTTCGTGGAGAAGCGTTACGGATGGTTGAGCTTGTGAATCGCGGTTCATTAAAGCCCAATTCAATTACCATTGTTAACTTACTGTCAGCATGCGCAAGTGTTGCTCATGGGATGCAAGTACATTGTTGGGCTATCAACCTGGGTTTTCAAATGGATGTATATGTTGCTACGGCGCTTTTGACGATGTATTGTACTTGTGAAAAAATGGGTTTCGCTGCAAAGGTATTCCAAGAGATGTCGAACAAAAACGTGGTGAGTTTTAATGCTTATATTTCAGGGCTTCTACTGAATGGCATGCCCCGTATGGTAATTGATGTATTTAAGAGCATGATGGAACGCCCACCTGGGAAATCGAATTCCGTCACACTGGTTTCTGTCCTTTCTGCTTGTTCTAGTCTTTCACATCTTGGATTTGGTAGGCAGGTTCATGCACTCACTGTTAAAATTGATAATGATGATGTAATGGTAGGAACTGCACTGGTGGACATGTATTCTAAATGTGGGGCTTGGCAGTGTGCACACAATGTATTAAACGAGCGGAAAGGAACCAGTAACTTATTTACTTGGAATTCATTGATTGCAGGAATGATGTTAAATGAACAGAGTGAAATTGCAGTGGAACTTTTTGAATCGTTGGAGTCCCATAAATTGCAACCAGATTCAGCTACCTGGAACTCAATGATAAGTGGACATGCCCATTTGGGTCAGCCGGCGAAGGCCTTTAAGTACTTTCATAGAATGCAATCGGCTGGCACAGTCCCTAGTTTAAAATCTCTCACCAGTTTTTTATCCATTTGTTCAGACTTGTCTGCATTGCGACATGGCAAAGAGATCCATGCCCAAGTAACTAAACGTTTCATTCATATGGACGTGTTGCTTGCCACGGCACTTATTGACATGTACATGAAATGTGGATGTCTTTCTTCAGCACAGAGACTCTTCGATCAATTTGGCTTCAAACCAAAAGATACAATATTTTGGAACGCAATGATCTCAGGTTACGGGAACAATGGGGAGAACAAATCTGCGTTTGATATATTTGATCGGATGCTGGAAGAAGGAGTACATCCTAATGCGGCCACATTTACCAGTCTCTTATCTATTTGCAGTCATTGTGGTCAGGTTGACAAAGGTTGGCAGTTTTTCAAGATGATGAACAAGAAATACGACCTTCAGCCAGATCGTGATCATTATAACTGCATGATAGACATTTTGGGTAGAGCCGGCCAGTTGGGGAAAGCTCGAAAATTGTTGGAAGAATTGCCAGAGCCTTCTATGTCTTCTCTTGCTTCTTTGCTTGGTGCTTGTAGCTTGCACAAAGATTCTAAACTGGGCGAAGAAATGGCTTCAAGAATTTCAGAATTAGAGCCTAAAAATCCACTTCCATTTGTTATCTTATCCAATATATATGCTGAGCTTGGAAGGTGGAAAGATGTTGAAAGGGTTAGAGAAATGATGAATGACAAAGGATTGAGAAAGCCATCTGGCCTTAGTTCAATAGAATGA 1845 42.11 MNREIVRLVAKGFYVEAFSMYSQHHSASLSSHNFIFPPLFKACAKLNSVPQGQMLHTHLMKVGFSADVYAATALTDMYLKLFHVDDALKVFDEMPHRNTASLNAMISGFLLNGFRGEALRMVELVNRGSLKPNSITIVNLLSACASVAHGMQVHCWAINLGFQMDVYVATALLTMYCTCEKMGFAAKVFQEMSNKNVVSFNAYISGLLLNGMPRMVIDVFKSMMERPPGKSNSVTLVSVLSACSSLSHLGFGRQVHALTVKIDNDDVMVGTALVDMYSKCGAWQCAHNVLNERKGTSNLFTWNSLIAGMMLNEQSEIAVELFESLESHKLQPDSATWNSMISGHAHLGQPAKAFKYFHRMQSAGTVPSLKSLTSFLSICSDLSALRHGKEIHAQVTKRFIHMDVLLATALIDMYMKCGCLSSAQRLFDQFGFKPKDTIFWNAMISGYGNNGENKSAFDIFDRMLEEGVHPNAATFTSLLSICSHCGQVDKGWQFFKMMNKKYDLQPDRDHYNCMIDILGRAGQLGKARKLLEELPEPSMSSLASLLGACSLHKDSKLGEEMASRISELEPKNPLPFVILSNIYAELGRWKDVERVREMMNDKGLRKPSGLSSIE 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8255972 8257816 - CmaCh04G016370.1 Cma04g01637 292718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01637 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Cma04g01637 614 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515
Cma04g01637 614 SUPERFAMILY TPR-like 390 535 IPR011990 GO:0005515
Cma04g01637 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Cma04g01637 614 Gene3D Tetratricopeptide repeat domain 482 611 IPR011990 GO:0005515
Cma04g01637 614 Gene3D Tetratricopeptide repeat domain 381 481 IPR011990 GO:0005515
Cma04g01637 614 Gene3D Tetratricopeptide repeat domain 148 250 IPR011990 GO:0005515
Cma04g01637 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Cma04g01637 614 Pfam PPR repeat family 435 482 IPR002885 -
Cma04g01637 614 Pfam PPR repeat family 298 344 IPR002885 -
Cma04g01637 614 PANTHER OS07G0578800 PROTEIN-RELATED 6 609 IPR045215 GO:0003723|GO:0009451
Cma04g01637 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Cma04g01637 614 Pfam PPR repeat 408 429 IPR002885 -
Cma04g01637 614 Pfam PPR repeat 72 97 IPR002885 -
Cma04g01637 614 Pfam PPR repeat 170 197 IPR002885 -
Cma04g01637 614 Pfam PPR repeat 198 226 IPR002885 -
Cma04g01637 614 Pfam PPR repeat 510 535 IPR002885 -
Cma04g01637 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 501 IPR002885 -
Cma04g01637 614 TIGRFAM PPR: pentatricopeptide repeat domain 440 472 IPR002885 -
Cma04g01637 614 TIGRFAM PPR: pentatricopeptide repeat domain 300 334 IPR002885 -
Cma04g01637 614 TIGRFAM PPR: pentatricopeptide repeat domain 474 507 IPR002885 -
Cma04g01637 614 TIGRFAM PPR: pentatricopeptide repeat domain 198 226 IPR002885 -
Cma04g01637 614 TIGRFAM PPR: pentatricopeptide repeat domain 511 534 IPR002885 -
Cma04g01637 614 TIGRFAM PPR: pentatricopeptide repeat domain 336 368 IPR002885 -
Cma04g01637 614 Pfam E motif 552 614 IPR046848 -
Cma04g01637 614 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 609 - -
Cma04g01637 614 Gene3D Tetratricopeptide repeat domain 263 380 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01637 - - - mcha:111019194 1009.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01637 Cma-Chr4:8255972 Cma18g00835 Cma-Chr18:7304105 5.46E-19 dispersed
Cma04g01637 Cma-Chr4:8255972 Cma17g00835 Cma-Chr17:6545237 7.32E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g863 . . . . . Bpe10g00857 . Bma15g00168 Cmo04g01715 . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0966 . . . . . . . . . . . . . . . . . Cma04g01637 . Car04g01678 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015078 0 0 0 1 1 0 1 0 0 0 0 0 1 0 0 1 0 1 1 0 0 1 0 1 1 0 1 1 1 1 14
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01637 Cma_Chr04 FPKM 0.185908 0.325359 0.350381 0.890162 1.724199 1.079435 1.513415 0.790725 0.567521 0.481397