Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01639 ATGGGAGGCCAAGGCGGCTTCCTGTTAATCAAGATTTGGGTTATCTCCTGCCTTCTCTCCTCTTATCGTGTTTTGGTCACCGGTGGAGATCTCTTGTGGACGAGTACCTTTCGTAAAACCAGTCGAGATAAGTGCTCGGGATTTTCTTTCATTTTGTTTCTGAATCATCCATCGAGATCAGCCGAAGTTATCGGCTCGCCGAGCTCGGTTACGGGAGAGAGATCTAGGGTTTTGTTTCATGAGAAGGGTACGGGAAAGGGTTTATTGACGTCCAAGAGCTTGAGTGTTAATTTTGTTAAGGCACGGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGACTTCAGGAGGTTGCAGCAAGATCCACCTGCTGGCATCAGTGGTGCTCCACTAGACAATAATATCATGCTATGGAATGCTGTCATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACCCTTCAGTTCACGGAGGATTATCCAAATAAGCCACCAACAGTTCGCTTTGTGTCCAGAATGTTCCACCCTAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTACAAAATCAATGGAGCCCAATCTACGATGTAGCAGCTATACTCACCTCTATTCAGTCGTTGCTGTGCGACCCCAATCCAAACTCACCTGCTAATTCTGAAGCTGCCCGGATGTTTAGCGAGAACAAGCGTGATTACAATAGGAGATCTCTCCGGCGACATCAAGGGCTGAGAATGGAAGCTCATGGCAGTGGATTCCGCCGCGTGTTCGTGCTCGCCTTTTGCGTCGCCGGGATTTGGTCCGCTTATATTTACCAAGGCGTTCTTCAGGAGACTCTGTCCACTAAACGCTTTGGTTCCGACGGAAAGAGATTTGAACACCTTTCCTTCCTTAACCTGGCACAAAATGTTGTCTGTTTAATATGGTCATATATAATGATAAAGCTCTGGTCCAGTCGTATCACTGGTGGTGCACCTTGGTGGACATACTGGAGTGCTGGTATTACGAATACTATTGGACCAGCTATGGGAATTGAAGCTTTGAAGTATATAAGCTATCCTGCCCAGGCATCTTATGAATTATGTTGTCCATTTCTGCAGGTCCTGGCAAAGTCATCAAAAATGATTCCAGTGATGCTGATGGGTACGCTAGTTTATGGTATTAAATACACATTTCCAGAATTTTTGTGTACCTTTCTGGTTGCTGGAGGAGTATCTACATTTGCTCTCTTAAAGACTAGCTCAAAGACTATCAGCAAGTTGGCACATCCTAATGCACCCCTTGGCTATGGGCTTTGCTTCCTGAACCTTGCATTTGATGGTTTCACGAATGCCACTCAGGATTCCATTTCAGCAAGTCCTCAGAAGCTTTATGCTGTTCAACAGTTTAAATCAATTATGTTTACGTATGGTCATATATTCGTCATCAATTCTGCAGAATTCTGCAGACAGCATCCTGAAGCAGCTTGGGACATTCTTCTGTATTGTCTCTGTGGAGCAGTTGGCCAAAATTTTATCTTCCTAACAATCAGCCGATTCGGTTCCCTTGCTAATACCACCATCACCACAACTCGCAAGTTTGTCAGCATTGTGGTGTCCTCTGTGCTCAGTGGAAACCCTCTGTCGTCGAAGCAGTGGGGCTGCGTTGTAATGGTCTTCTCAGGGTTATCATATCAAATTTACCTCAAGTGGAGGAAGCTGCAAAAGTTGCAGCGAAAGAGAAAGACCACCTAA 1761 45.37 MGGQGGFLLIKIWVISCLLSSYRVLVTGGDLLWTSTFRKTSRDKCSGFSFILFLNHPSRSAEVIGSPSSVTGERSRVLFHEKGTGKGLLTSKSLSVNFVKARPVRMSTPARKRLMRDFRRLQQDPPAGISGAPLDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRDYNRRSLRRHQGLRMEAHGSGFRRVFVLAFCVAGIWSAYIYQGVLQETLSTKRFGSDGKRFEHLSFLNLAQNVVCLIWSYIMIKLWSSRITGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQASYELCCPFLQVLAKSSKMIPVMLMGTLVYGIKYTFPEFLCTFLVAGGVSTFALLKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSISASPQKLYAVQQFKSIMFTYGHIFVINSAEFCRQHPEAAWDILLYCLCGAVGQNFIFLTISRFGSLANTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVVMVFSGLSYQIYLKWRKLQKLQRKRKTT 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8263661 8271192 + CmaCh04G016390.1 Cma04g01639 292720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01639 586 Pfam UAA transporter family 269 571 IPR013657 GO:0055085
Cma04g01639 586 CDD UBCc 112 245 IPR000608 -
Cma04g01639 586 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 182 197 IPR023313 -
Cma04g01639 586 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 109 255 IPR000608 -
Cma04g01639 586 Gene3D Ubiquitin Conjugating Enzyme 77 266 IPR016135 -
Cma04g01639 586 SMART ubc_7 112 255 - -
Cma04g01639 586 SUPERFAMILY UBC-like 101 246 IPR016135 -
Cma04g01639 586 PANTHER BNAA09G45580D PROTEIN 261 584 - -
Cma04g01639 586 Pfam Ubiquitin-conjugating enzyme 113 245 IPR000608 -
Cma04g01639 586 PANTHER SOLUTE CARRIER FAMILY 35 MEMBER B 261 584 IPR013657 GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01639 K15275 SLC35B1; solute carrier family 35 (UDP-galactose transporter), member B1 - csv:101222296 543.888
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01639 Cma18g01167 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00836 Cma-Chr2:4871327 Cma04g01639 Cma-Chr4:8263661 2.59E-25 dispersed
Cma04g01639 Cma-Chr4:8263661 Cma18g01169 Cma-Chr18:9366702 3.33E-98 dispersed
Cma04g01638 Cma-Chr4:8259093 Cma04g01639 Cma-Chr4:8263661 9.76E-98 tandem
Cma18g01167 Cma-Chr18:9354049 Cma04g01639 Cma-Chr4:8263661 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g876 . Blo16g01127 . Bda11g01228 Bpe13g01424 Bpe10g00860 . Bma15g00166 Cmo04g01718 Cmo18g01191 . Cma18g01167 . Car18g01076 Sed06g1547 Cpe09g00162 Cpe01g01451 Bhi07g01593 Tan04g1107 Cmetu10g1539 Lac13g0297 Hepe10g1722 . . Cla05g02462 Cam05g2649 Cec05g2682 Cco05g2718 Clacu05g2652 Cmu05g2505 Cre05g2619 Cone13ag0972 Cone19ag0962 . . Lsi04g00445 Csa05g02429 Chy10g00982 Cme10g00436 Blo06g00898 . . Bda11g01228 . . . Bma06g00674 . . . Cma04g01639 . Car04g01681 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01639 Cma_Chr04 FPKM 106.492905 111.698074 139.60347 134.46727 81.107857 88.812424 82.868591 173.556671 179.465698 173.303909